Factsheet for HORVU0Hr1G040340.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G277700.1	Wheat	golgi	97.18	97.18
TraesCS4B01G035400.1	Wheat	cytosol	96.24	96.24
TraesCS4D01G033400.1	Wheat	cytosol	94.37	95.26
Zm00001d033596_P001	Maize	extracellular	86.39	87.2
EER91045	Sorghum	cytosol	85.45	86.67
Zm00001d013505_P001	Maize	cytosol	82.16	81.02
KRG93050	Soybean	cytosol	72.3	75.49
VIT_07s0151g00690.t01	Wine grape	extracellular	72.3	75.12
KRH36312	Soybean	endoplasmic reticulum	71.83	75.0
GSMUA_Achr8P20400_001	Banana	cytosol	71.83	75.0
GSMUA_Achr10P...	Banana	unclear	71.36	74.51
Bra040831.1-P	Field mustard	cytosol	70.89	74.02
PGSC0003DMT400082075	Potato	cytosol	70.89	74.02
Bra018359.1-P	Field mustard	extracellular	70.89	74.02
Bra036904.1-P	Field mustard	cytosol	70.89	74.02
Bra037068.1-P	Field mustard	extracellular	70.89	74.02
CDY50676	Canola	cytosol	70.89	74.02
CDY29774	Canola	cytosol	70.89	74.02
CDY10662	Canola	cytosol	70.89	74.02
Bra039714.1-P	Field mustard	cytosol	70.89	74.02
CDY10294	Canola	cytosol	70.42	73.53
Solyc09g082320.2.1	Tomato	extracellular	70.42	73.53
AT3G22630.1	Thale cress	cytosol	70.42	73.53
CDY34241	Canola	cytosol, extracellular	56.34	71.43
AT4G14800.2	Thale cress	cytosol	70.89	70.23
CDY42791	Canola	cytosol	70.42	70.09
Bra023815.1-P	Field mustard	cytosol	32.86	68.63
CDY57166	Canola	cytosol	70.89	67.11
CDY65369	Canola	cytosol	55.4	66.29
CDY55258	Canola	cytosol	50.7	53.73

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:HORVU0Hr1G040340	EnsemblPlants:HORVU0Hr1G040340.1
InterPro:IPR023333	InterPro:IPR029055	UniProt:M0WQE8	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000296B3B0	SEG:seg	:	:

Description

Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:M0WQE8]

Coordinates

chrchrUn:+:249649822..249652534

Molecular Weight (calculated)

23293.9 Da

IEP (calculated)

5.629

GRAVY (calculated)

-0.015

Length

213 amino acids

Sequence
(BLAST)

001: MECVIGVVGR DFAVVAADTS AVQSILVHKT DEDKIMLLDS HKLMGASGEP GDRVQFTEFI QNNLHLYQFR NNMPLSTAAT ANFTRGELAT ALRKNPYSVN
101: IILAGFDKDA GASMYYIDYI ATLHKIDKGA FGYGSYFCLS LMDKLYHPDM TVEEAVDLVD KCIKEIRLRL VVAPQNFAIK IVDKDGARDY ARREIGGDSP
201: AAATTAATVA TTA

Best Arabidopsis Sequence Match ( AT4G14800.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.