Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29774 | Canola | cytosol | 100.0 | 100.0 |
| Bra018359.1-P | Field mustard | extracellular | 97.55 | 97.55 |
| Bra037068.1-P | Field mustard | extracellular | 97.55 | 97.55 |
| Bra039714.1-P | Field mustard | cytosol | 97.06 | 97.06 |
| Bra040831.1-P | Field mustard | cytosol | 93.63 | 93.63 |
| Bra023815.1-P | Field mustard | cytosol | 46.08 | 92.16 |
| KRH36312 | Soybean | endoplasmic reticulum | 86.76 | 86.76 |
| KRG93050 | Soybean | cytosol | 86.76 | 86.76 |
| AT4G14800.2 | Thale cress | cytosol | 91.18 | 86.51 |
| GSMUA_Achr10P... | Banana | unclear | 82.84 | 82.84 |
| GSMUA_Achr8P20400_001 | Banana | cytosol | 82.84 | 82.84 |
| PGSC0003DMT400082075 | Potato | cytosol | 81.86 | 81.86 |
| Solyc09g082320.2.1 | Tomato | extracellular | 80.88 | 80.88 |
| VIT_07s0151g00690.t01 | Wine grape | extracellular | 80.88 | 80.49 |
| EER91045 | Sorghum | cytosol | 77.45 | 75.24 |
| Zm00001d033596_P001 | Maize | extracellular | 76.47 | 73.93 |
| TraesCS4D01G033400.1 | Wheat | cytosol | 75.98 | 73.46 |
| TraesCS4B01G035400.1 | Wheat | cytosol | 75.98 | 72.77 |
| TraesCS4A01G277700.1 | Wheat | golgi | 75.49 | 72.3 |
| HORVU0Hr1G040340.1 | Barley | cytosol | 74.02 | 70.89 |
| Zm00001d013505_P001 | Maize | cytosol | 74.51 | 70.37 |
| TraesCS5A01G432200.1 | Wheat | plastid | 35.29 | 35.29 |
| TraesCS5B01G434300.1 | Wheat | cytosol, extracellular | 34.8 | 34.8 |
| TraesCS5D01G440200.1 | Wheat | cytosol, extracellular | 34.8 | 34.8 |
Protein Annotations
| MapMan:19.2.6.1.2.4 | Gene3D:3.60.20.10 | EnsemblPlantsGene:Bra036904 | EnsemblPlants:Bra036904.1 | EnsemblPlants:Bra036904.1-P | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | UniProt:M4F744 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 |
| ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF99 | InterPro:Proteasome_beta2 | InterPro:Proteasome_bsu_CS |
| InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | UniParc:UPI0002545006 | : | : |
Description
AT3G22630 (E=3e-108) PBD1, PRCGB | PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase
Coordinates
chrA01:-:12174937..12176365
Molecular Weight (calculated)
22454.8 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.027
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MECVFGLVGN GFAIVAADTS AVHSILVHKN NEDKIMALDS HKLIAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHFRSDM SVEEAIDLVD KCILEIRSRL VIAPPNFVIK IVDKDGAREH AWRQSVQDVT
201: TAAV
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHFRSDM SVEEAIDLVD KCILEIRSRL VIAPPNFVIK IVDKDGAREH AWRQSVQDVT
201: TAAV
001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV
Arabidopsis Description
PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.