Factsheet for Bra040831.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10662	Canola	cytosol	100.0	100.0
Bra023815.1-P	Field mustard	cytosol	48.53	97.06
AT3G22630.1	Thale cress	cytosol	97.06	97.06
Bra018359.1-P	Field mustard	extracellular	93.63	93.63
Bra036904.1-P	Field mustard	cytosol	93.63	93.63
Bra037068.1-P	Field mustard	extracellular	93.63	93.63
Bra039714.1-P	Field mustard	cytosol	93.63	93.63
KRH36312	Soybean	endoplasmic reticulum	84.8	84.8
KRG93050	Soybean	cytosol	84.8	84.8
GSMUA_Achr8P20400_001	Banana	cytosol	81.86	81.86
GSMUA_Achr10P...	Banana	unclear	81.86	81.86
PGSC0003DMT400082075	Potato	cytosol	80.39	80.39
Solyc09g082320.2.1	Tomato	extracellular	79.41	79.41
VIT_07s0151g00690.t01	Wine grape	extracellular	79.41	79.02
EER91045	Sorghum	cytosol	76.47	74.29
TraesCS4D01G033400.1	Wheat	cytosol	75.98	73.46
Zm00001d033596_P001	Maize	extracellular	75.49	72.99
TraesCS4B01G035400.1	Wheat	cytosol	75.98	72.77
TraesCS4A01G277700.1	Wheat	golgi	75.49	72.3
HORVU0Hr1G040340.1	Barley	cytosol	74.02	70.89
Zm00001d013505_P001	Maize	cytosol	73.53	69.44
TraesCS5A01G432200.1	Wheat	plastid	36.27	36.27
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	34.8	34.8
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	34.8	34.8

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	EMBL:AENI01004384	EnsemblPlantsGene:Bra040831	EnsemblPlants:Bra040831.1	EnsemblPlants:Bra040831.1-P
GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4FIA2	InterPro:Ntn_hydrolases_N
PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000254743E	:

Description

AT3G22630 (E=7e-111) PBD1, PRCGB | PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase

Coordinates

chrA05:+:15320121..15321552

Molecular Weight (calculated)

22598.0 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.061

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGLVGK GFAIVAADTS AVHSILLHKN NEDKIMLLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDEES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYREDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVQDVT
201: TAAV

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.