Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10294 | Canola | cytosol | 97.55 | 97.55 |
| Bra040831.1-P | Field mustard | cytosol | 97.06 | 97.06 |
| CDY10662 | Canola | cytosol | 97.06 | 97.06 |
| Bra023815.1-P | Field mustard | cytosol | 48.04 | 96.08 |
| CDY34241 | Canola | cytosol, extracellular | 76.47 | 92.86 |
| AT4G14800.2 | Thale cress | cytosol | 91.18 | 86.51 |
| KRH36312 | Soybean | endoplasmic reticulum | 85.78 | 85.78 |
| KRG93050 | Soybean | cytosol | 85.78 | 85.78 |
| GSMUA_Achr10P... | Banana | unclear | 82.35 | 82.35 |
| GSMUA_Achr8P20400_001 | Banana | cytosol | 82.35 | 82.35 |
| PGSC0003DMT400082075 | Potato | cytosol | 81.37 | 81.37 |
| VIT_07s0151g00690.t01 | Wine grape | extracellular | 80.88 | 80.49 |
| Solyc09g082320.2.1 | Tomato | extracellular | 80.39 | 80.39 |
| EER91045 | Sorghum | cytosol | 76.47 | 74.29 |
| Zm00001d033596_P001 | Maize | extracellular | 75.49 | 72.99 |
| TraesCS4D01G033400.1 | Wheat | cytosol | 75.0 | 72.51 |
| TraesCS4B01G035400.1 | Wheat | cytosol | 75.0 | 71.83 |
| TraesCS4A01G277700.1 | Wheat | golgi | 74.51 | 71.36 |
| CDY55258 | Canola | cytosol | 70.1 | 71.14 |
| HORVU0Hr1G040340.1 | Barley | cytosol | 73.53 | 70.42 |
| Zm00001d013505_P001 | Maize | cytosol | 73.53 | 69.44 |
| TraesCS5A01G432200.1 | Wheat | plastid | 36.76 | 36.76 |
| TraesCS5B01G434300.1 | Wheat | cytosol, extracellular | 35.29 | 35.29 |
| TraesCS5D01G440200.1 | Wheat | cytosol, extracellular | 35.29 | 35.29 |
Protein Annotations
| MapMan:19.2.6.1.2.4 | Gene3D:3.60.20.10 | EntrezGene:821834 | UniProt:A0A178VMP5 | ProteinID:AEE76659.1 | EMBL:AF043534 |
| ArrayExpress:AT3G22630 | EnsemblPlantsGene:AT3G22630 | RefSeq:AT3G22630 | TAIR:AT3G22630 | RefSeq:AT3G22630-TAIR-G | EnsemblPlants:AT3G22630.1 |
| TAIR:AT3G22630.1 | EMBL:AY052249 | EMBL:AY143817 | Unigene:At.398 | ProteinID:BAB01477.1 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005829 | GO:GO:0005839 | GO:GO:0005886 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019774 | GO:GO:0048046 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | RefSeq:NP_188902.1 |
| InterPro:Ntn_hydrolases_N | UniProt:O23714 | ProteinID:OAP07074.1 | Symbol:PBD1 | PFAM:PF00227 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF99 | InterPro:Proteasome_beta2 | InterPro:Proteasome_bsu_CS |
| InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | MEROPS:T01.984 | UniParc:UPI0000000D62 | EMBL:Y13692 |
Description
PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
Coordinates
chr3:-:8009540..8010862
Molecular Weight (calculated)
22541.9 Da
IEP (calculated)
6.355
GRAVY (calculated)
-0.034
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.