CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023815.1-P	Field mustard	cytosol	60.12	99.02
CDY65369	Canola	cytosol	83.93	79.21
CDY10662	Canola	cytosol	94.64	77.94
CDY10294	Canola	cytosol	94.05	77.45
AT3G22630.1	Thale cress	cytosol	92.86	76.47
CDY29774	Canola	cytosol	89.29	73.53
CDY50676	Canola	cytosol	89.29	73.53
CDY42791	Canola	cytosol	89.88	70.56
CDY57166	Canola	cytosol	89.29	66.67
KRG93050	Soybean	cytosol	80.36	66.18
KRH36312	Soybean	endoplasmic reticulum	80.36	66.18
GSMUA_Achr10P...	Banana	unclear	77.38	63.73
GSMUA_Achr8P20400_001	Banana	cytosol	77.38	63.73
PGSC0003DMT400082075	Potato	cytosol	75.6	62.25
Solyc09g082320.2.1	Tomato	extracellular	74.4	61.27
VIT_07s0151g00690.t01	Wine grape	extracellular	74.4	60.98
EER91045	Sorghum	cytosol	73.21	58.57
TraesCS4D01G033400.1	Wheat	cytosol	73.21	58.29
TraesCS4B01G035400.1	Wheat	cytosol	73.21	57.75
Zm00001d033596_P001	Maize	extracellular	72.02	57.35
TraesCS4A01G277700.1	Wheat	golgi	72.62	57.28
HORVU0Hr1G040340.1	Barley	cytosol	71.43	56.34
CDY55258	Canola	cytosol	66.07	55.22
Zm00001d013505_P001	Maize	cytosol	69.05	53.7
TraesCS5A01G432200.1	Wheat	plastid	39.29	32.35
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	36.9	30.39
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	36.9	30.39

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:A0A078H8Y2	UniProt:A0A078H8Y2	EnsemblPlants:CDY34241	ProteinID:CDY34241
ProteinID:CDY34241.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00056253001
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EE0C8C	:	:

Description

BnaA01g24580DBnaA01g24580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8Y2]

Coordinates

chrLK032331:+:252966..253583

Molecular Weight (calculated)

18543.2 Da

IEP (calculated)

5.213

GRAVY (calculated)

0.065

Length

168 amino acids

Sequence
(BLAST)

001: MECVLGIVGK GFAIVGADTS AVHSILLHKN NEDKIMLLDS HKLVAASGEP GDRYVLVFNP YSVNILMAGY DNESGASLYY IDYIATLHKV DKGAFGYGSY
101: FSLSTMDRHY RSDMSVEEAI ELVDKCILEI RSRLVVAPPN FVIKIVDKDG ARDYAWRQSV QDVTTAAV

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.