CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039714.1-P	Field mustard	cytosol	100.0	100.0
CDY29774	Canola	cytosol	97.06	97.06
CDY10294	Canola	cytosol	94.12	94.12
CDY10662	Canola	cytosol	93.63	93.63
CDY42791	Canola	cytosol	97.55	92.99
CDY34241	Canola	cytosol, extracellular	73.53	89.29
CDY57166	Canola	cytosol	97.06	88.0
AT4G14800.2	Thale cress	cytosol	91.67	86.98
KRH36312	Soybean	endoplasmic reticulum	86.76	86.76
KRG93050	Soybean	cytosol	86.76	86.76
CDY65369	Canola	cytosol	75.0	85.96
GSMUA_Achr10P...	Banana	unclear	82.84	82.84
GSMUA_Achr8P20400_001	Banana	cytosol	82.84	82.84
VIT_07s0151g00690.t01	Wine grape	extracellular	81.86	81.46
PGSC0003DMT400082075	Potato	cytosol	81.37	81.37
Solyc09g082320.2.1	Tomato	extracellular	80.39	80.39
EER91045	Sorghum	cytosol	77.45	75.24
Zm00001d033596_P001	Maize	extracellular	76.47	73.93
TraesCS4D01G033400.1	Wheat	cytosol	75.49	72.99
TraesCS4B01G035400.1	Wheat	cytosol	75.49	72.3
TraesCS4A01G277700.1	Wheat	golgi	75.0	71.83
HORVU0Hr1G040340.1	Barley	cytosol	74.02	70.89
Zm00001d013505_P001	Maize	cytosol	74.51	70.37
CDY55258	Canola	cytosol	68.14	69.15
TraesCS5A01G432200.1	Wheat	plastid	36.27	36.27
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	35.78	35.78
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	35.78	35.78

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:A0A078IKX5	UniProt:A0A078IKX5	EnsemblPlants:CDY50676	ProteinID:CDY50676
ProteinID:CDY50676.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00097244001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99
InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0002545A00

Description

BnaA08g29360DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078IKX5]

Coordinates

chrLK032931:-:10803..12311

Molecular Weight (calculated)

22543.9 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.050

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGLVGD GFAIVAADTS AVHSILVHKN NEDKIMVLDS HKLIAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREH AWRQSVQDVT
201: TASL

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.