CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023815.1-P	Field mustard	cytosol	47.76	94.12
CDY10294	Canola	cytosol	71.64	70.59
CDY10662	Canola	cytosol	71.64	70.59
AT3G22630.1	Thale cress	cytosol	71.14	70.1
CDY50676	Canola	cytosol	69.15	68.14
CDY29774	Canola	cytosol	68.66	67.65
CDY34241	Canola	cytosol, extracellular	55.22	66.07
CDY42791	Canola	cytosol	69.15	64.95
CDY57166	Canola	cytosol	68.16	60.89
KRG93050	Soybean	cytosol	61.69	60.78
KRH36312	Soybean	endoplasmic reticulum	61.69	60.78
GSMUA_Achr10P...	Banana	unclear	60.7	59.8
GSMUA_Achr8P20400_001	Banana	cytosol	60.7	59.8
PGSC0003DMT400082075	Potato	cytosol	60.2	59.31
VIT_07s0151g00690.t01	Wine grape	extracellular	59.7	58.54
Solyc09g082320.2.1	Tomato	extracellular	59.2	58.33
EER91045	Sorghum	cytosol	57.21	54.76
Zm00001d033596_P001	Maize	extracellular	56.72	54.03
CDY65369	Canola	cytosol	47.26	53.37
TraesCS4D01G033400.1	Wheat	cytosol	55.72	53.08
TraesCS4B01G035400.1	Wheat	cytosol	55.72	52.58
TraesCS4A01G277700.1	Wheat	golgi	55.22	52.11
HORVU0Hr1G040340.1	Barley	cytosol	53.73	50.7
Zm00001d013505_P001	Maize	cytosol	53.73	50.0
TraesCS5A01G432200.1	Wheat	plastid	24.88	24.51
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	23.88	23.53
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	23.88	23.53

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:A0A078IY44	UniProt:A0A078IY44	EnsemblPlants:CDY55258	ProteinID:CDY55258
ProteinID:CDY55258.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00016610001	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EE3AF3
SEG:seg	:	:	:	:	:

Description

BnaCnng28610DBnaCnng28610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY44]

Coordinates

chrLK033389:-:17723..18986

Molecular Weight (calculated)

22486.6 Da

IEP (calculated)

8.998

GRAVY (calculated)

-0.433

Length

201 amino acids

Sequence
(BLAST)

001: MLTQLSTNQD PGEGIRDRSG GYIGGSQHHA PQKQRGQDHA SRLSQARCCQ RRARRPVEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDNES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDWHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWLQDVTTAA
201: V

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.