Factsheet for TraesCS5D01G440200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	97.55	97.55
TraesCS5A01G432200.1	Wheat	plastid	93.63	93.63
CDY34241	Canola	cytosol, extracellular	30.39	36.9
GSMUA_Achr8P20400_001	Banana	cytosol	36.76	36.76
Bra023815.1-P	Field mustard	cytosol	18.14	36.27
GSMUA_Achr10P...	Banana	unclear	36.27	36.27
VIT_07s0151g00690.t01	Wine grape	extracellular	36.27	36.1
CDY50676	Canola	cytosol	35.78	35.78
PGSC0003DMT400082075	Potato	cytosol	35.78	35.78
KRG93050	Soybean	cytosol	35.78	35.78
Bra039714.1-P	Field mustard	cytosol	35.78	35.78
TraesCS4D01G033400.1	Wheat	cytosol	36.76	35.55
CDY65369	Canola	cytosol	30.88	35.39
AT3G22630.1	Thale cress	cytosol	35.29	35.29
Solyc09g082320.2.1	Tomato	extracellular	35.29	35.29
CDY10662	Canola	cytosol	34.8	34.8
Bra018359.1-P	Field mustard	extracellular	34.8	34.8
Bra036904.1-P	Field mustard	cytosol	34.8	34.8
Bra037068.1-P	Field mustard	extracellular	34.8	34.8
KRH36312	Soybean	endoplasmic reticulum	34.8	34.8
Bra040831.1-P	Field mustard	cytosol	34.8	34.8
CDY10294	Canola	cytosol	34.8	34.8
CDY29774	Canola	cytosol	34.8	34.8
AT4G14800.2	Thale cress	cytosol	35.78	33.95
CDY42791	Canola	cytosol	34.8	33.18
CDY57166	Canola	cytosol	34.8	31.56
CDY55258	Canola	cytosol	23.53	23.88

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF6	InterPro:Proteasome_beta2	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G440200	EnsemblPlants:TraesCS5D01G440200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:493462322..493463047

Molecular Weight (calculated)

21140.5 Da

IEP (calculated)

8.999

GRAVY (calculated)

0.121

Length

204 amino acids

Sequence
(BLAST)

001: MDSVFGVVGG GFAVVAAGTS AAGRSVVFIN PDNDRVTSLG SKLLLGVSGV PGDCLRLRDE VRASTSKIHS AAAAADVARG AVIGCAQSAN AVIAGYDKAE
101: GPTMYAVGGT APPERVEQYR TAGCGAGLCT AVMENHYRPG MTVKEAVALV DRCIKEVRRL GLASFVIMVV DKDGAREYTR RILRPKAVIE IKSSQGTPIV
201: STNN

Best Arabidopsis Sequence Match ( AT4G14800.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.