Factsheet for PGSC0003DMT400082075

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082320.2.1	Tomato	extracellular	98.53	98.53
KRG93050	Soybean	cytosol	86.76	86.76
KRH36312	Soybean	endoplasmic reticulum	86.27	86.27
VIT_07s0151g00690.t01	Wine grape	extracellular	86.27	85.85
GSMUA_Achr10P...	Banana	unclear	85.29	85.29
GSMUA_Achr8P20400_001	Banana	cytosol	84.31	84.31
CDY29774	Canola	cytosol	81.86	81.86
Bra036904.1-P	Field mustard	cytosol	81.86	81.86
Bra039714.1-P	Field mustard	cytosol	81.37	81.37
CDY50676	Canola	cytosol	81.37	81.37
AT3G22630.1	Thale cress	cytosol	81.37	81.37
Bra037068.1-P	Field mustard	extracellular	80.88	80.88
Bra018359.1-P	Field mustard	extracellular	80.88	80.88
Bra040831.1-P	Field mustard	cytosol	80.39	80.39
CDY10294	Canola	cytosol	80.39	80.39
CDY10662	Canola	cytosol	80.39	80.39
CDY42791	Canola	cytosol	81.37	77.57
Bra023815.1-P	Field mustard	cytosol	38.73	77.45
AT4G14800.2	Thale cress	cytosol	80.39	76.28
CDY34241	Canola	cytosol, extracellular	62.25	75.6
EER91045	Sorghum	cytosol	77.45	75.24
Zm00001d033596_P001	Maize	extracellular	76.47	73.93
CDY57166	Canola	cytosol	80.88	73.33
TraesCS4D01G033400.1	Wheat	cytosol	75.0	72.51
TraesCS4A01G277700.1	Wheat	golgi	75.0	71.83
TraesCS4B01G035400.1	Wheat	cytosol	74.51	71.36
HORVU0Hr1G040340.1	Barley	cytosol	74.02	70.89
CDY65369	Canola	cytosol	61.27	70.22
Zm00001d013505_P001	Maize	cytosol	71.57	67.59
CDY55258	Canola	cytosol	59.31	60.2
TraesCS5A01G432200.1	Wheat	plastid	36.76	36.76
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	35.78	35.78
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	35.29	35.29

Protein Annotations

EntrezGene:102598896	MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	UniProt:M1D5K4	InterPro:Ntn_hydrolases_N	PFAM:PF00227	EnsemblPlantsGene:PGSC0003DMG400032248	PGSC:PGSC0003DMG400032248
EnsemblPlants:PGSC0003DMT400082075	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.984	UniParc:UPI000295DD6F	RefSeq:XP_006360766.1	:

Description

Proteasome subunit beta type [Source:PGSC_GENE;Acc:PGSC0003DMG400032248]

Coordinates

chr9:-:53984851..53990691

Molecular Weight (calculated)

22673.3 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.068

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGMVGN GFSLVVADSS AVHSILVHKS NEDKIMILDS HKLMGASGEA GDRAQFTEYV QKNVALYQFR NGIPLTTAAT ANFTRGELAT ALRKNPYMVN
101: IILAGYDKET GPSLYYIDYI ATLHKVDKAA FGYGSYFSLA MMDRHYRKDM TVEEAVDLAD KCIIEIRSRL VVAPPNFVIK IVDKDGAREY AWRESVKDAP
201: VSNI

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.