Factsheet for Solyc09g082320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082075	Potato	cytosol	98.53	98.53
KRG93050	Soybean	cytosol	86.27	86.27
VIT_07s0151g00690.t01	Wine grape	extracellular	86.27	85.85
KRH36312	Soybean	endoplasmic reticulum	85.78	85.78
GSMUA_Achr10P...	Banana	unclear	84.31	84.31
GSMUA_Achr8P20400_001	Banana	cytosol	83.33	83.33
CDY29774	Canola	cytosol	80.88	80.88
Bra036904.1-P	Field mustard	cytosol	80.88	80.88
Bra039714.1-P	Field mustard	cytosol	80.39	80.39
CDY50676	Canola	cytosol	80.39	80.39
AT3G22630.1	Thale cress	cytosol	80.39	80.39
Bra037068.1-P	Field mustard	extracellular	79.9	79.9
Bra018359.1-P	Field mustard	extracellular	79.9	79.9
Bra040831.1-P	Field mustard	cytosol	79.41	79.41
CDY10294	Canola	cytosol	79.41	79.41
CDY10662	Canola	cytosol	79.41	79.41
CDY42791	Canola	cytosol	80.39	76.64
Bra023815.1-P	Field mustard	cytosol	37.75	75.49
AT4G14800.2	Thale cress	cytosol	79.41	75.35
EER91045	Sorghum	cytosol	76.96	74.76
CDY34241	Canola	cytosol, extracellular	61.27	74.4
Zm00001d033596_P001	Maize	extracellular	75.98	73.46
CDY57166	Canola	cytosol	79.9	72.44
TraesCS4D01G033400.1	Wheat	cytosol	74.51	72.04
TraesCS4A01G277700.1	Wheat	golgi	74.51	71.36
TraesCS4B01G035400.1	Wheat	cytosol	74.02	70.89
HORVU0Hr1G040340.1	Barley	cytosol	73.53	70.42
CDY65369	Canola	cytosol	60.29	69.1
Zm00001d013505_P001	Maize	cytosol	71.08	67.13
CDY55258	Canola	cytosol	58.33	59.2
TraesCS5A01G432200.1	Wheat	plastid	36.27	36.27
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	35.29	35.29
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	34.8	34.8

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
UniProt:K4CVK9	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99
InterPro:Proteasome_beta2	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc09g082320.2	EnsemblPlants:Solyc09g082320.2.1
MEROPS:T01.984	UniParc:UPI000276BF74	:	:	:	:

Description

No Description!

Coordinates

chr9:-:68075527..68080655

Molecular Weight (calculated)

22633.3 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.066

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGMVGN GFSLVVADSS AVHSILVHKS NEDKIMILDS HKLMGASGEA GDRAQFTEYV QKNVALYQFR NGIPLTTAAT ANFTRGELAT ALRKNPYMVN
101: IILAGYDKGT GPSLYYIDYI ATLHKVDKAA FGYGSYFSLA MMDRHYRKDM TVEEAVDLAD KCIMEIRSRL VVAPPNFVIK IVDKEGAREY AWRESVKDAP
201: VSNI

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.