CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34241	Canola	cytosol, extracellular	79.21	83.93
Bra018359.1-P	Field mustard	extracellular	89.33	77.94
Bra037068.1-P	Field mustard	extracellular	89.33	77.94
CDY29774	Canola	cytosol	86.52	75.49
CDY50676	Canola	cytosol	85.96	75.0
CDY42791	Canola	cytosol	87.08	72.43
CDY10662	Canola	cytosol	82.58	72.06
CDY10294	Canola	cytosol	82.02	71.57
CDY57166	Canola	cytosol	89.33	70.67
KRG93050	Soybean	cytosol	76.4	66.67
KRH36312	Soybean	endoplasmic reticulum	76.4	66.67
AT4G14800.2	Thale cress	cytosol	79.21	65.58
GSMUA_Achr10P...	Banana	unclear	72.47	63.24
GSMUA_Achr8P20400_001	Banana	cytosol	72.47	63.24
PGSC0003DMT400082075	Potato	cytosol	70.22	61.27
Solyc09g082320.2.1	Tomato	extracellular	69.1	60.29
VIT_07s0151g00690.t01	Wine grape	extracellular	69.1	60.0
EER91045	Sorghum	cytosol	67.42	57.14
TraesCS4D01G033400.1	Wheat	cytosol	67.42	56.87
TraesCS4B01G035400.1	Wheat	cytosol	67.42	56.34
Zm00001d033596_P001	Maize	extracellular	66.29	55.92
TraesCS4A01G277700.1	Wheat	golgi	66.85	55.87
HORVU0Hr1G040340.1	Barley	cytosol	66.29	55.4
Zm00001d013505_P001	Maize	cytosol	66.29	54.63
CDY55258	Canola	cytosol	53.37	47.26
TraesCS5A01G432200.1	Wheat	plastid	37.08	32.35
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	35.39	30.88
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	35.39	30.88

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:A0A078JFA8	UniProt:A0A078JFA8	EnsemblPlants:CDY65369	ProteinID:CDY65369
ProteinID:CDY65369.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00045708001
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EF4047	:	:

Description

BnaC04g53800DBnaC04g53800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFA8]

Coordinates

chrLK034759:+:16897..18460

Molecular Weight (calculated)

19794.6 Da

IEP (calculated)

6.224

GRAVY (calculated)

-0.093

Length

178 amino acids

Sequence
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILVHKN NEDKIMLLDS HKLIAASGEP GDRVQRMCHC ITRHCFEKES LLCEHPEAGY DKEAGASLYY IDYIATLHKV
101: DKGAFGYGSY FSLSTMDRHF RSDMSVEEAI ELVDKCITEI RSRLVIAPPN FVIKIVDKDG ARTHAWRQSV QDVTTASV

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.