CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29774	Canola	cytosol	94.86	99.51
CDY50676	Canola	cytosol	92.99	97.55
CDY10294	Canola	cytosol	89.72	94.12
CDY10662	Canola	cytosol	89.72	94.12
CDY34241	Canola	cytosol, extracellular	70.56	89.88
CDY57166	Canola	cytosol	93.93	89.33
AT4G14800.2	Thale cress	cytosol	89.72	89.3
CDY65369	Canola	cytosol	72.43	87.08
KRG93050	Soybean	cytosol	82.24	86.27
KRH36312	Soybean	endoplasmic reticulum	82.24	86.27
GSMUA_Achr10P...	Banana	unclear	78.5	82.35
GSMUA_Achr8P20400_001	Banana	cytosol	78.5	82.35
PGSC0003DMT400082075	Potato	cytosol	77.57	81.37
Solyc09g082320.2.1	Tomato	extracellular	76.64	80.39
VIT_07s0151g00690.t01	Wine grape	extracellular	76.64	80.0
EER91045	Sorghum	cytosol	73.36	74.76
Zm00001d033596_P001	Maize	extracellular	72.43	73.46
TraesCS4D01G033400.1	Wheat	cytosol	71.96	72.99
TraesCS4B01G035400.1	Wheat	cytosol	71.96	72.3
TraesCS4A01G277700.1	Wheat	golgi	71.5	71.83
HORVU0Hr1G040340.1	Barley	cytosol	70.09	70.42
Zm00001d013505_P001	Maize	cytosol	70.56	69.91
CDY55258	Canola	cytosol	64.95	69.15
TraesCS5A01G432200.1	Wheat	plastid	33.64	35.29
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	33.18	34.8
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	33.18	34.8

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:A0A078HYP6	UniProt:A0A078HYP6	EnsemblPlants:CDY42791	ProteinID:CDY42791
ProteinID:CDY42791.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00075352001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99
InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EDAD88

Description

BnaC01g22750DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078HYP6]

Coordinates

chrLK032534:+:172547..174099

Molecular Weight (calculated)

23590.2 Da

IEP (calculated)

5.937

GRAVY (calculated)

0.042

Length

214 amino acids

Sequence
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILVHKN NEDKIMALDS HKLIAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLTTAAA ANFTRGELAT ALRKVVYSDI
101: CDLINPYSVN ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHFRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREH
201: AWRQSVQDVT TAAV

Best Arabidopsis Sequence Match ( AT4G14800.2 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKEFCATF
101: QGYSDFCVLM NPYSVNILMA GYDKEAGASL YYIDYIATLH KVDKGAFGYG SYFSLSTMDR HYRSDMSVEE AIELVDKCIL EIRSRLVIAP PNFVIKIVDK
201: DGAREYGWRI STADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.