Factsheet for VIT_07s0151g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytoskeleton, cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93050	Soybean	cytosol	89.27	89.71
KRH36312	Soybean	endoplasmic reticulum	89.27	89.71
GSMUA_Achr8P20400_001	Banana	cytosol	87.32	87.75
GSMUA_Achr10P...	Banana	unclear	86.34	86.76
Solyc09g082320.2.1	Tomato	extracellular	85.85	86.27
PGSC0003DMT400082075	Potato	cytosol	85.85	86.27
Bra039714.1-P	Field mustard	cytosol	81.46	81.86
CDY50676	Canola	cytosol	81.46	81.86
AT3G22630.1	Thale cress	cytosol	80.49	80.88
Bra036904.1-P	Field mustard	cytosol	80.49	80.88
CDY29774	Canola	cytosol	80.49	80.88
Bra018359.1-P	Field mustard	extracellular	79.51	79.9
Bra037068.1-P	Field mustard	extracellular	79.51	79.9
CDY10294	Canola	cytosol	79.51	79.9
CDY10662	Canola	cytosol	79.02	79.41
Bra040831.1-P	Field mustard	cytosol	79.02	79.41
CDY42791	Canola	cytosol	80.0	76.64
AT4G14800.2	Thale cress	cytosol	79.02	75.35
Zm00001d033596_P001	Maize	extracellular	77.07	74.88
EER91045	Sorghum	cytosol	76.59	74.76
CDY34241	Canola	cytosol, extracellular	60.98	74.4
Bra023815.1-P	Field mustard	cytosol	36.59	73.53
TraesCS4D01G033400.1	Wheat	cytosol	74.63	72.51
CDY57166	Canola	cytosol	79.51	72.44
HORVU0Hr1G040340.1	Barley	cytosol	75.12	72.3
TraesCS4A01G277700.1	Wheat	golgi	74.63	71.83
TraesCS4B01G035400.1	Wheat	cytosol	74.15	71.36
Zm00001d013505_P001	Maize	cytosol	73.66	69.91
CDY65369	Canola	cytosol	60.0	69.1
CDY55258	Canola	cytosol	58.54	59.7
TraesCS5A01G432200.1	Wheat	plastid	36.59	36.76
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	36.1	36.27
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	35.61	35.78

Protein Annotations

EntrezGene:100852565	wikigene:100852565	MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	UniProt:A5BYC0	EMBL:AM475624
ProteinID:CAN79443	ProteinID:CAN79443.1	ProteinID:CCB51899	ProteinID:CCB51899.1	EMBL:FN595764	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	EntrezGene:LOC100852565	wikigene:LOC100852565	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.984	TIGR:TC52582	TIGR:TC52887	UniParc:UPI0001524778
ArrayExpress:VIT_07s0151g00690	EnsemblPlantsGene:VIT_07s0151g00690	EnsemblPlants:VIT_07s0151g00690.t01	RefSeq:XP_003632316	RefSeq:XP_003632316.1	:

Description

No Description!

Coordinates

chr7:+:1035959..1039845

Molecular Weight (calculated)

22491.9 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.024

Length

205 amino acids

Sequence
(BLAST)

001: MECVFGLVGD GFALVVADSS AVHSILVHKS NEDKIMVLDS HKLLGASGEG GDRAQFTEYI QKNVALYQFR NGIPLTTAAA ANFTRGELAT ALRKNPYAVN
101: ILLAGYDKDI GPSLYYIDYI ASLHKIEKGA FGYGSYFSLA MMDRHYHSGM TVEEAVDLVD KCIMEIRSRL VVAPPNFVIK IVDKDGAREY AWRESIKDTT
201: GAPTS

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.