Factsheet for TraesCS5A01G432200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	96.08	96.08
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	93.63	93.63
CDY34241	Canola	cytosol, extracellular	32.35	39.29
Bra023815.1-P	Field mustard	cytosol	19.61	39.22
GSMUA_Achr8P20400_001	Banana	cytosol	37.75	37.75
GSMUA_Achr10P...	Banana	unclear	37.25	37.25
CDY65369	Canola	cytosol	32.35	37.08
PGSC0003DMT400082075	Potato	cytosol	36.76	36.76
KRG93050	Soybean	cytosol	36.76	36.76
AT3G22630.1	Thale cress	cytosol	36.76	36.76
VIT_07s0151g00690.t01	Wine grape	extracellular	36.76	36.59
CDY50676	Canola	cytosol	36.27	36.27
Solyc09g082320.2.1	Tomato	extracellular	36.27	36.27
CDY10662	Canola	cytosol	36.27	36.27
CDY10294	Canola	cytosol	36.27	36.27
Bra040831.1-P	Field mustard	cytosol	36.27	36.27
Bra039714.1-P	Field mustard	cytosol	36.27	36.27
TraesCS4A01G277700.1	Wheat	golgi	37.75	36.15
KRH36312	Soybean	endoplasmic reticulum	35.78	35.78
CDY29774	Canola	cytosol	35.29	35.29
Bra037068.1-P	Field mustard	extracellular	35.29	35.29
Bra036904.1-P	Field mustard	cytosol	35.29	35.29
Bra018359.1-P	Field mustard	extracellular	35.29	35.29
AT4G14800.2	Thale cress	cytosol	36.27	34.42
CDY42791	Canola	cytosol	35.29	33.64
CDY57166	Canola	cytosol	35.29	32.0
CDY55258	Canola	cytosol	24.51	24.88

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PANTHER:PTHR11599	PANTHER:PTHR11599:SF6	InterPro:Proteasome_beta2	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
EnsemblPlantsGene:TraesCS5A01G432200	EnsemblPlants:TraesCS5A01G432200.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:616621500..616622225

Molecular Weight (calculated)

21135.5 Da

IEP (calculated)

8.479

GRAVY (calculated)

0.114

Length

204 amino acids

Sequence
(BLAST)

001: MDSVFGMVGG GFAVVAAGTS AAGRSVVLIN PDNDRVTSLG SNLLLGVSGV PGDCLRLRDE VRASASKIHS AAAAADAARE AVIGCAQSAN AVIAGYDKVE
101: GPTMYAVGGT APPERVEQYR AAGCGAGLCT TVMENHYRPG MTVKEAVALV DRCIKEVRRV GLASFVIMVV DKDGAREYAR RILRPKAVIE IKSSQGTPIV
201: NSNN

Best Arabidopsis Sequence Match ( AT4G14800.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.