Factsheet for TraesCS4A01G277700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G035400.1	Wheat	cytosol	97.18	97.18
HORVU0Hr1G040340.1	Barley	cytosol	97.18	97.18
TraesCS4D01G033400.1	Wheat	cytosol	96.24	97.16
EER91045	Sorghum	cytosol	87.32	88.57
Zm00001d033596_P001	Maize	extracellular	86.39	87.2
Zm00001d013505_P001	Maize	cytosol	82.63	81.48
Bra036904.1-P	Field mustard	cytosol	72.3	75.49
Bra040831.1-P	Field mustard	cytosol	72.3	75.49
CDY10662	Canola	cytosol	72.3	75.49
CDY29774	Canola	cytosol	72.3	75.49
CDY50676	Canola	cytosol	71.83	75.0
PGSC0003DMT400082075	Potato	cytosol	71.83	75.0
KRG93050	Soybean	cytosol	71.83	75.0
GSMUA_Achr8P20400_001	Banana	cytosol	71.83	75.0
GSMUA_Achr10P...	Banana	unclear	71.83	75.0
CDY10294	Canola	cytosol	71.83	75.0
Bra039714.1-P	Field mustard	cytosol	71.83	75.0
Bra037068.1-P	Field mustard	extracellular	71.83	75.0
Bra018359.1-P	Field mustard	extracellular	71.83	75.0
VIT_07s0151g00690.t01	Wine grape	extracellular	71.83	74.63
KRH36312	Soybean	endoplasmic reticulum	71.36	74.51
Solyc09g082320.2.1	Tomato	extracellular	71.36	74.51
AT3G22630.1	Thale cress	cytosol	71.36	74.51
CDY34241	Canola	cytosol, extracellular	57.28	72.62
CDY42791	Canola	cytosol	71.83	71.5
AT4G14800.2	Thale cress	cytosol	71.83	71.16
Bra023815.1-P	Field mustard	cytosol	33.8	70.59
CDY57166	Canola	cytosol	71.83	68.0
CDY65369	Canola	cytosol	55.87	66.85
CDY55258	Canola	cytosol	52.11	55.22
TraesCS5A01G432200.1	Wheat	plastid	36.15	37.75

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
EnsemblPlantsGene:TraesCS4A01G277700	EnsemblPlants:TraesCS4A01G277700.1	TIGR:cd03758	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:585456231..585458315

Molecular Weight (calculated)

23369.1 Da

IEP (calculated)

6.121

GRAVY (calculated)

-0.010

Length

213 amino acids

Sequence
(BLAST)

001: MECVIGVVGR DFAVVAADTS AVQSILVHKT DEDKIMLLDS HKLMGASGEP GDRVQFTEFI QKNLHLYQFR NNMPLSTAAT ANFTRGELAT ALRKNPYSVN
101: IILAGFDKDA GASMYYIDYI ATLHKIDKGA FGYGSYFCLS LMDKLYRPDM TVEEAVDLVD KCIKEIRLRL VVAPQNFAIK IVDKDGARDY ARREIGGDSP
201: AVATATATIA TTA

Best Arabidopsis Sequence Match ( AT4G14800.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.