Factsheet for Zm00001d033596_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91045	Sorghum	cytosol	95.73	96.19
Zm00001d013505_P001	Maize	cytosol	90.05	87.96
TraesCS4D01G033400.1	Wheat	cytosol	86.73	86.73
TraesCS4B01G035400.1	Wheat	cytosol	87.2	86.39
TraesCS4A01G277700.1	Wheat	golgi	87.2	86.39
HORVU0Hr1G040340.1	Barley	cytosol	87.2	86.39
GSMUA_Achr8P20400_001	Banana	cytosol	75.83	78.43
VIT_07s0151g00690.t01	Wine grape	extracellular	74.88	77.07
GSMUA_Achr10P...	Banana	unclear	74.41	76.96
CDY50676	Canola	cytosol	73.93	76.47
PGSC0003DMT400082075	Potato	cytosol	73.93	76.47
KRG93050	Soybean	cytosol	73.93	76.47
CDY29774	Canola	cytosol	73.93	76.47
Bra039714.1-P	Field mustard	cytosol	73.93	76.47
Bra036904.1-P	Field mustard	cytosol	73.93	76.47
CDY10294	Canola	cytosol	73.46	75.98
KRH36312	Soybean	endoplasmic reticulum	73.46	75.98
Solyc09g082320.2.1	Tomato	extracellular	73.46	75.98
CDY10662	Canola	cytosol	72.99	75.49
Bra040831.1-P	Field mustard	cytosol	72.99	75.49
AT3G22630.1	Thale cress	cytosol	72.99	75.49
Bra037068.1-P	Field mustard	extracellular	72.51	75.0
Bra018359.1-P	Field mustard	extracellular	72.51	75.0
Bra023815.1-P	Field mustard	cytosol	35.07	72.55
CDY42791	Canola	cytosol	73.46	72.43
CDY34241	Canola	cytosol, extracellular	57.35	72.02
AT4G14800.2	Thale cress	cytosol	72.51	71.16
CDY57166	Canola	cytosol	72.51	68.0
CDY65369	Canola	cytosol	55.92	66.29
CDY55258	Canola	cytosol	54.03	56.72

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	EMBL:BT067024	UniProt:C0PFF5	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603
InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	ProteinID:ONM07991.1	PFAM:PF00227	ScanProsite:PS00854
PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.984	UniParc:UPI000195CC3B	EnsemblPlantsGene:Zm00001d033596	EnsemblPlants:Zm00001d033596_P001
EnsemblPlants:Zm00001d033596_T001	SEG:seg	:	:	:	:

Description

Proteasome subunit beta type

Coordinates

chr1:-:268074541..268077881

Molecular Weight (calculated)

23215.0 Da

IEP (calculated)

5.325

GRAVY (calculated)

0.052

Length

211 amino acids

Sequence
(BLAST)

001: MECVLGVVGR DFALVAADTS AVQSILVHKT DEDKVMVLDS QKLMGASGEP GDRVQFTEFI QKNLHLYQFR NTIPLSTAAA ANFTRGELAT ALRKNPYMVN
101: IILGGYDKDV GASLYYIDYI ATLHKIDKGA FGYGSYFCLS LMDKLYHPDM TVEEAVDLVD KCIKEIRLRL VVAPQNFVIK IVDKDGAREY ARRELVGDNA
201: PAEAATAVVA A

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.