Factsheet for GSMUA_Achr8P20400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	unclear	97.06	97.06
VIT_07s0151g00690.t01	Wine grape	extracellular	87.75	87.32
KRH36312	Soybean	endoplasmic reticulum	86.76	86.76
KRG93050	Soybean	cytosol	86.27	86.27
PGSC0003DMT400082075	Potato	cytosol	84.31	84.31
Solyc09g082320.2.1	Tomato	extracellular	83.33	83.33
CDY29774	Canola	cytosol	82.84	82.84
CDY50676	Canola	cytosol	82.84	82.84
Bra039714.1-P	Field mustard	cytosol	82.84	82.84
Bra036904.1-P	Field mustard	cytosol	82.84	82.84
AT3G22630.1	Thale cress	cytosol	82.35	82.35
CDY10294	Canola	cytosol	81.86	81.86
CDY10662	Canola	cytosol	81.86	81.86
Bra040831.1-P	Field mustard	cytosol	81.86	81.86
Bra037068.1-P	Field mustard	extracellular	81.37	81.37
Bra018359.1-P	Field mustard	extracellular	81.37	81.37
Bra023815.1-P	Field mustard	cytosol	39.71	79.41
CDY42791	Canola	cytosol	82.35	78.5
AT4G14800.2	Thale cress	cytosol	81.86	77.67
CDY34241	Canola	cytosol, extracellular	63.73	77.38
Zm00001d033596_P001	Maize	extracellular	78.43	75.83
EER91045	Sorghum	cytosol	77.94	75.71
CDY57166	Canola	cytosol	81.37	73.78
TraesCS4D01G033400.1	Wheat	cytosol	75.0	72.51
CDY65369	Canola	cytosol	63.24	72.47
TraesCS4B01G035400.1	Wheat	cytosol	75.49	72.3
HORVU0Hr1G040340.1	Barley	cytosol	75.0	71.83
TraesCS4A01G277700.1	Wheat	golgi	75.0	71.83
Zm00001d013505_P001	Maize	cytosol	75.49	71.3
CDY55258	Canola	cytosol	59.8	60.7
TraesCS5A01G432200.1	Wheat	plastid	37.75	37.75
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	36.76	36.76
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	36.76	36.76

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSMUA_Achr8G20400_001	EnsemblPlants:GSMUA_Achr8P20400_001
EnsemblPlants:GSMUA_Achr8T20400_001	InterPro:IPR023333	InterPro:IPR029055	UniProt:M0TS43	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0002963E27	:	:

Description

Proteasome subunit beta type-2-A [Source:GMGC_GENE;Acc:GSMUA_Achr8G20400_001]

Coordinates

chr8:-:25430337..25432825

Molecular Weight (calculated)

22468.0 Da

IEP (calculated)

6.152

GRAVY (calculated)

0.069

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGLVGD GFALVAADTS AVHSILVHKS NEDKVMILDS HKLLGASGEA GDRVQFTEYI QKNVHLYEFR NGIPLATAAA ANFTRGELAL ALRKNPYFVN
101: ILLAGYDKDI GPSLYYIDYI ATLHKVDKGA FGYGSYFALS MMDRHYHSGM SLEEAIDLVD KCIIEIRSRL VVAPPNFVIK IVDKDGAREY AWRESIKDAG
201: VSAA

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.