CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033596_P001	Maize	extracellular	96.19	95.73
TraesCS4A01G277700.1	Wheat	golgi	88.57	87.32
TraesCS4D01G033400.1	Wheat	cytosol	87.62	87.2
TraesCS4B01G035400.1	Wheat	cytosol	87.14	85.92
HORVU0Hr1G040340.1	Barley	cytosol	86.67	85.45
GSMUA_Achr8P20400_001	Banana	cytosol	75.71	77.94
CDY50676	Canola	cytosol	75.24	77.45
PGSC0003DMT400082075	Potato	cytosol	75.24	77.45
CDY29774	Canola	cytosol	75.24	77.45
Bra036904.1-P	Field mustard	cytosol	75.24	77.45
Bra039714.1-P	Field mustard	cytosol	75.24	77.45
CDY10294	Canola	cytosol	74.76	76.96
Solyc09g082320.2.1	Tomato	extracellular	74.76	76.96
GSMUA_Achr10P...	Banana	unclear	74.76	76.96
VIT_07s0151g00690.t01	Wine grape	extracellular	74.76	76.59
Bra040831.1-P	Field mustard	cytosol	74.29	76.47
KRG93050	Soybean	cytosol	74.29	76.47
CDY10662	Canola	cytosol	74.29	76.47
AT3G22630.1	Thale cress	cytosol	74.29	76.47
Bra037068.1-P	Field mustard	extracellular	73.81	75.98
KRH36312	Soybean	endoplasmic reticulum	73.81	75.98
Bra018359.1-P	Field mustard	extracellular	73.81	75.98
Bra023815.1-P	Field mustard	cytosol	35.71	73.53
CDY42791	Canola	cytosol	74.76	73.36
CDY34241	Canola	cytosol, extracellular	58.57	73.21
AT4G14800.2	Thale cress	cytosol	73.81	72.09
CDY57166	Canola	cytosol	73.81	68.89
CDY65369	Canola	cytosol	57.14	67.42
CDY55258	Canola	cytosol	54.76	57.21

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	EntrezGene:8062956	UniProt:C5WNX2	EnsemblPlants:EER91045	ProteinID:EER91045
ProteinID:EER91045.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3001G128400	SUPFAM:SSF56235	unigene:Sbi.14686
UniParc:UPI0001A825E7	RefSeq:XP_002464047.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:10108298..10111086

Molecular Weight (calculated)

23186.0 Da

IEP (calculated)

5.691

GRAVY (calculated)

0.053

Length

210 amino acids

Sequence
(BLAST)

001: MECVLGVVGR DFAVVAADTS AVQSILVHKT DEDKVMVLDS HKLMGASGEP GDRVQFTEFI QKNLHLYQFR NTIPLSTAAA ANFTRGELAT ALRKNPYMVN
101: IILGGYDKDV GASLYYIDYI ATLHKIDKGA FGYGSYFCLS LMDKLYRPDM TVEEAVDLVD KCIKEIRLRL VVAPQNFVIK IVDKDGAREY ARRELVGDNA
201: PVDAAITVAA

Best Arabidopsis Sequence Match ( AT4G14800.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.