Factsheet for Bra037068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytoskeleton, cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018359.1-P	Field mustard	extracellular	100.0	100.0
Bra036904.1-P	Field mustard	cytosol	97.55	97.55
Bra039714.1-P	Field mustard	cytosol	97.06	97.06
Bra040831.1-P	Field mustard	cytosol	93.63	93.63
Bra023815.1-P	Field mustard	cytosol	45.59	91.18
CDY57166	Canola	cytosol	100.0	90.67
CDY65369	Canola	cytosol	77.94	89.33
KRG93050	Soybean	cytosol	86.76	86.76
KRH36312	Soybean	endoplasmic reticulum	86.76	86.76
AT4G14800.2	Thale cress	cytosol	90.69	86.05
GSMUA_Achr10P...	Banana	unclear	81.37	81.37
GSMUA_Achr8P20400_001	Banana	cytosol	81.37	81.37
PGSC0003DMT400082075	Potato	cytosol	80.88	80.88
Solyc09g082320.2.1	Tomato	extracellular	79.9	79.9
VIT_07s0151g00690.t01	Wine grape	extracellular	79.9	79.51
EER91045	Sorghum	cytosol	75.98	73.81
TraesCS4D01G033400.1	Wheat	cytosol	75.49	72.99
Zm00001d033596_P001	Maize	extracellular	75.0	72.51
TraesCS4B01G035400.1	Wheat	cytosol	75.49	72.3
TraesCS4A01G277700.1	Wheat	golgi	75.0	71.83
HORVU0Hr1G040340.1	Barley	cytosol	74.02	70.89
Zm00001d013505_P001	Maize	cytosol	73.04	68.98
TraesCS5A01G432200.1	Wheat	plastid	35.29	35.29
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	34.8	34.8
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	34.8	34.8

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra037068	EnsemblPlants:Bra037068.1	EnsemblPlants:Bra037068.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4DPB8	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0001BA840E	:	:

Description

AT3G22630 (E=1e-107) PBD1, PRCGB | PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase

Coordinates

chrA05:+:9761897..9763323

Molecular Weight (calculated)

22486.8 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.039

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILVHKN NEDKIMLLDS HKLIAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHFRSDM SVEEAIELVD KCITEIRSRL VIAPPNFVIK IVDKDGARTH AWRQSVQDVT
201: TASV

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.