Factsheet for Bra023815.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34241	Canola	cytosol, extracellular	99.02	60.12
Bra040831.1-P	Field mustard	cytosol	97.06	48.53
AT3G22630.1	Thale cress	cytosol	96.08	48.04
CDY55258	Canola	cytosol	94.12	47.76
Bra036904.1-P	Field mustard	cytosol	92.16	46.08
Bra039714.1-P	Field mustard	cytosol	92.16	46.08
Bra018359.1-P	Field mustard	extracellular	91.18	45.59
Bra037068.1-P	Field mustard	extracellular	91.18	45.59
GSMUA_Achr10P...	Banana	unclear	79.41	39.71
GSMUA_Achr8P20400_001	Banana	cytosol	79.41	39.71
KRG93050	Soybean	cytosol	78.43	39.22
KRH36312	Soybean	endoplasmic reticulum	78.43	39.22
PGSC0003DMT400082075	Potato	cytosol	77.45	38.73
Solyc09g082320.2.1	Tomato	extracellular	75.49	37.75
VIT_07s0151g00690.t01	Wine grape	extracellular	73.53	36.59
EER91045	Sorghum	cytosol	73.53	35.71
Zm00001d033596_P001	Maize	extracellular	72.55	35.07
TraesCS4D01G033400.1	Wheat	cytosol	71.57	34.6
TraesCS4B01G035400.1	Wheat	cytosol	71.57	34.27
TraesCS4A01G277700.1	Wheat	golgi	70.59	33.8
Zm00001d013505_P001	Maize	cytosol	70.59	33.33
HORVU0Hr1G040340.1	Barley	cytosol	68.63	32.86
TraesCS5A01G432200.1	Wheat	plastid	39.22	19.61
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	36.27	18.14
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	36.27	18.14

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	EnsemblPlantsGene:Bra023815	EnsemblPlants:Bra023815.1	EnsemblPlants:Bra023815.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR029055	UniProt:M4E4W1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PANTHER:PTHR11599
PANTHER:PTHR11599:SF99	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0002544178	:	:

Description

AT3G22630 (E=1e-052) PBD1, PRCGB | PBD1 (20S PROTEASOME BETA SUBUNIT D1); peptidase/ threonine-type endopeptidase

Coordinates

chrA01:+:20182245..20182553

Molecular Weight (calculated)

11451.5 Da

IEP (calculated)

4.793

GRAVY (calculated)

-0.175

Length

102 amino acids

Sequence
(BLAST)

001: MAGYDNESGA SLYYIDYIAT LHKVDKGAFG YGSYFSLSTM DRHYRSDMSA EEAIELVDKC ILEIRSRLVV APPNFVIKIV DKDGARDYAW RQSVQDVTTA
101: AV

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.