CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
plastid 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
nucleus 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytoskeleton, cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93050	Soybean	cytosol	99.02	99.02
VIT_07s0151g00690.t01	Wine grape	extracellular	89.71	89.27
Bra018359.1-P	Field mustard	extracellular	86.76	86.76
Bra036904.1-P	Field mustard	cytosol	86.76	86.76
Bra037068.1-P	Field mustard	extracellular	86.76	86.76
Bra039714.1-P	Field mustard	cytosol	86.76	86.76
CDY29774	Canola	cytosol	86.76	86.76
GSMUA_Achr8P20400_001	Banana	cytosol	86.76	86.76
CDY50676	Canola	cytosol	86.76	86.76
PGSC0003DMT400082075	Potato	cytosol	86.27	86.27
GSMUA_Achr10P...	Banana	unclear	86.27	86.27
Solyc09g082320.2.1	Tomato	extracellular	85.78	85.78
AT3G22630.1	Thale cress	cytosol	85.78	85.78
CDY10662	Canola	cytosol	84.8	84.8
Bra040831.1-P	Field mustard	cytosol	84.8	84.8
CDY10294	Canola	cytosol	84.31	84.31
CDY42791	Canola	cytosol	86.27	82.24
CDY34241	Canola	cytosol, extracellular	66.18	80.36
AT4G14800.2	Thale cress	cytosol	84.31	80.0
CDY57166	Canola	cytosol	86.76	78.67
Bra023815.1-P	Field mustard	cytosol	39.22	78.43
CDY65369	Canola	cytosol	66.67	76.4
EER91045	Sorghum	cytosol	75.98	73.81
Zm00001d033596_P001	Maize	extracellular	75.98	73.46
TraesCS4D01G033400.1	Wheat	cytosol	74.51	72.04
HORVU0Hr1G040340.1	Barley	cytosol	75.0	71.83
TraesCS4B01G035400.1	Wheat	cytosol	75.0	71.83
TraesCS4A01G277700.1	Wheat	golgi	74.51	71.36
Zm00001d013505_P001	Maize	cytosol	73.04	68.98
CDY55258	Canola	cytosol	60.78	61.69
TraesCS5A01G432200.1	Wheat	plastid	35.78	35.78
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	34.8	34.8
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	34.8	34.8

Protein Annotations

EntrezGene:100499738	MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	EMBL:ACUP02006723	EMBL:BT089367	UniProt:C6SW24
EnsemblPlantsGene:GLYMA_10G295600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	EnsemblPlants:KRH36312
ProteinID:KRH36312	ProteinID:KRH36312.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.984
UniParc:UPI0001B159FA	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:51279522..51280825

Molecular Weight (calculated)

22600.1 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.049

Length

204 amino acids

Sequence
(BLAST)

001: MECVFGLVGN GFAIVVADSS AVHSILVHKS NEDKIMLLDS HKLIAASGEP GDRVQFTEYI QKNVALYQFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILLAGYDKET GPELYYIDYI ATLHKLEKGA FGYGSYFSLS MMDRHYHSGM SVEEAIDLVD KCIMEIRSRL VVAPPNFVIK IVDKDGAREY AWRESVKDTP
201: VPSA

Best Arabidopsis Sequence Match ( AT3G22630.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN NEDKIMVLDS HKLVAASGEP GDRVQFTEYV QKNVSLYKFR NGIPLTTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDDES GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VVAPPNFVIK IVDKDGARDY AWRQSVKDVT
201: TAVV

Arabidopsis Description

PBD1Proteasome subunit beta type-2-A [Source:UniProtKB/Swiss-Prot;Acc:O23714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.