Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
- cytosol 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039714.1-P | Field mustard | cytosol | 86.98 | 91.67 |
| CDY50676 | Canola | cytosol | 86.98 | 91.67 |
| Bra036904.1-P | Field mustard | cytosol | 86.51 | 91.18 |
| CDY29774 | Canola | cytosol | 86.51 | 91.18 |
| AT3G22630.1 | Thale cress | cytosol | 86.51 | 91.18 |
| Bra018359.1-P | Field mustard | extracellular | 86.05 | 90.69 |
| Bra037068.1-P | Field mustard | extracellular | 86.05 | 90.69 |
| CDY42791 | Canola | cytosol | 89.3 | 89.72 |
| KRH36312 | Soybean | endoplasmic reticulum | 80.0 | 84.31 |
| KRG93050 | Soybean | cytosol | 79.53 | 83.82 |
| CDY57166 | Canola | cytosol | 87.44 | 83.56 |
| GSMUA_Achr8P20400_001 | Banana | cytosol | 77.67 | 81.86 |
| GSMUA_Achr10P... | Banana | unclear | 77.21 | 81.37 |
| PGSC0003DMT400082075 | Potato | cytosol | 76.28 | 80.39 |
| Solyc09g082320.2.1 | Tomato | extracellular | 75.35 | 79.41 |
| CDY65369 | Canola | cytosol | 65.58 | 79.21 |
| VIT_07s0151g00690.t01 | Wine grape | extracellular | 75.35 | 79.02 |
| EER91045 | Sorghum | cytosol | 72.09 | 73.81 |
| Zm00001d033596_P001 | Maize | extracellular | 71.16 | 72.51 |
| TraesCS4D01G033400.1 | Wheat | cytosol | 71.16 | 72.51 |
| TraesCS4B01G035400.1 | Wheat | cytosol | 71.63 | 72.3 |
| TraesCS4A01G277700.1 | Wheat | golgi | 71.16 | 71.83 |
| HORVU0Hr1G040340.1 | Barley | cytosol | 70.23 | 70.89 |
| Zm00001d013505_P001 | Maize | cytosol | 69.3 | 68.98 |
| TraesCS5A01G432200.1 | Wheat | plastid | 34.42 | 36.27 |
| TraesCS5B01G434300.1 | Wheat | cytosol, extracellular | 33.95 | 35.78 |
| TraesCS5D01G440200.1 | Wheat | cytosol, extracellular | 33.95 | 35.78 |
Protein Annotations
| MapMan:19.2.6.1.2.4 | Gene3D:3.60.20.10 | EntrezGene:827135 | ProteinID:AEE83501.1 | ArrayExpress:AT4G14800 | EnsemblPlantsGene:AT4G14800 |
| RefSeq:AT4G14800 | TAIR:AT4G14800 | RefSeq:AT4G14800-TAIR-G | EnsemblPlants:AT4G14800.2 | TAIR:AT4G14800.2 | Unigene:At.395 |
| UniProt:F4JIF9 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046686 | GO:GO:0051603 | InterPro:IPR023333 |
| InterPro:IPR029055 | RefSeq:NP_001190731.1 | InterPro:Ntn_hydrolases_N | Symbol:PBD2 | PFAM:PF00227 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF99 |
| InterPro:Proteasome_beta2 | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | UniParc:UPI0001E92F5E |
Description
PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
Coordinates
chr4:+:8500266..8502240
Molecular Weight (calculated)
23828.5 Da
IEP (calculated)
6.017
GRAVY (calculated)
-0.013
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKEFCATF
101: QGYSDFCVLM NPYSVNILMA GYDKEAGASL YYIDYIATLH KVDKGAFGYG SYFSLSTMDR HYRSDMSVEE AIELVDKCIL EIRSRLVIAP PNFVIKIVDK
201: DGAREYGWRI STADA
101: QGYSDFCVLM NPYSVNILMA GYDKEAGASL YYIDYIATLH KVDKGAFGYG SYFSLSTMDR HYRSDMSVEE AIELVDKCIL EIRSRLVIAP PNFVIKIVDK
201: DGAREYGWRI STADA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.