Factsheet for TraesCS4D01G033400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G277700.1	Wheat	golgi	97.16	96.24
TraesCS4B01G035400.1	Wheat	cytosol	96.68	95.77
HORVU0Hr1G040340.1	Barley	cytosol	95.26	94.37
EER91045	Sorghum	cytosol	87.2	87.62
Zm00001d033596_P001	Maize	extracellular	86.73	86.73
Zm00001d013505_P001	Maize	cytosol	82.94	81.02
Bra036904.1-P	Field mustard	cytosol	73.46	75.98
Bra040831.1-P	Field mustard	cytosol	73.46	75.98
CDY10662	Canola	cytosol	73.46	75.98
CDY29774	Canola	cytosol	73.46	75.98
CDY50676	Canola	cytosol	72.99	75.49
CDY10294	Canola	cytosol	72.99	75.49
Bra039714.1-P	Field mustard	cytosol	72.99	75.49
Bra037068.1-P	Field mustard	extracellular	72.99	75.49
Bra018359.1-P	Field mustard	extracellular	72.99	75.49
GSMUA_Achr10P...	Banana	unclear	72.51	75.0
GSMUA_Achr8P20400_001	Banana	cytosol	72.51	75.0
KRG93050	Soybean	cytosol	72.51	75.0
PGSC0003DMT400082075	Potato	cytosol	72.51	75.0
AT3G22630.1	Thale cress	cytosol	72.51	75.0
VIT_07s0151g00690.t01	Wine grape	extracellular	72.51	74.63
KRH36312	Soybean	endoplasmic reticulum	72.04	74.51
Solyc09g082320.2.1	Tomato	extracellular	72.04	74.51
CDY34241	Canola	cytosol, extracellular	58.29	73.21
CDY42791	Canola	cytosol	72.99	71.96
Bra023815.1-P	Field mustard	cytosol	34.6	71.57
AT4G14800.2	Thale cress	cytosol	72.51	71.16
CDY57166	Canola	cytosol	72.99	68.44
CDY65369	Canola	cytosol	56.87	67.42
CDY55258	Canola	cytosol	53.08	55.72
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	35.55	36.76

Protein Annotations

MapMan:19.2.6.1.2.4	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF99	InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
EnsemblPlantsGene:TraesCS4D01G033400	EnsemblPlants:TraesCS4D01G033400.1	TIGR:cd03758	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:15353868..15356293

Molecular Weight (calculated)

23198.9 Da

IEP (calculated)

6.121

GRAVY (calculated)

-0.038

Length

211 amino acids

Sequence
(BLAST)

001: MECVIGVVGR DFAVVAADTS AVQSILVHKT DEDKIMLLDS HKLMGASGEP GDRVQFTEFI QKNLHLYQFR NNMPLSTAAT ANFTRGELAT ALRKNPYSVN
101: IILAGFDKDA GASMYYIDYI ATLHKIDKGA FGYGSYFCLS LMDKLYRPDM TVEEAVDLVD KCIKEIRLRL VVAPQNFAIK IVDKDGARDY ARREIGGDSP
201: ATATATIATT A

Best Arabidopsis Sequence Match ( AT4G14800.1 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKNPYSVN
101: ILMAGYDKEA GASLYYIDYI ATLHKVDKGA FGYGSYFSLS TMDRHYRSDM SVEEAIELVD KCILEIRSRL VIAPPNFVIK IVDKDGAREY GWRISTADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.