CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018359.1-P	Field mustard	extracellular	90.67	100.0
Bra037068.1-P	Field mustard	extracellular	90.67	100.0
CDY29774	Canola	cytosol	88.44	97.55
CDY50676	Canola	cytosol	88.0	97.06
CDY42791	Canola	cytosol	89.33	93.93
CDY10662	Canola	cytosol	84.89	93.63
CDY10294	Canola	cytosol	84.44	93.14
CDY65369	Canola	cytosol	70.67	89.33
CDY34241	Canola	cytosol, extracellular	66.67	89.29
AT4G14800.2	Thale cress	cytosol	83.56	87.44
KRG93050	Soybean	cytosol	78.67	86.76
KRH36312	Soybean	endoplasmic reticulum	78.67	86.76
GSMUA_Achr10P...	Banana	unclear	73.78	81.37
GSMUA_Achr8P20400_001	Banana	cytosol	73.78	81.37
PGSC0003DMT400082075	Potato	cytosol	73.33	80.88
Solyc09g082320.2.1	Tomato	extracellular	72.44	79.9
VIT_07s0151g00690.t01	Wine grape	extracellular	72.44	79.51
EER91045	Sorghum	cytosol	68.89	73.81
TraesCS4D01G033400.1	Wheat	cytosol	68.44	72.99
Zm00001d033596_P001	Maize	extracellular	68.0	72.51
TraesCS4B01G035400.1	Wheat	cytosol	68.44	72.3
TraesCS4A01G277700.1	Wheat	golgi	68.0	71.83
HORVU0Hr1G040340.1	Barley	cytosol	67.11	70.89
Zm00001d013505_P001	Maize	cytosol	66.22	68.98
CDY55258	Canola	cytosol	60.89	68.16
TraesCS5A01G432200.1	Wheat	plastid	32.0	35.29
TraesCS5B01G434300.1	Wheat	cytosol, extracellular	31.56	34.8
TraesCS5D01G440200.1	Wheat	cytosol, extracellular	31.56	34.8

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:A0A078J1W2	UniProt:A0A078J1W2	EnsemblPlants:CDY57166	ProteinID:CDY57166
ProteinID:CDY57166.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00020601001	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF99
InterPro:Proteasome_beta2	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EF454E

Description

BnaA05g35410DProteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A078J1W2]

Coordinates

chrLK033551:+:2219..3892

Molecular Weight (calculated)

24797.7 Da

IEP (calculated)

6.939

GRAVY (calculated)

0.052

Length

225 amino acids

Sequence
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILVHKN NEDKIMLLDS HKLIAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLTTAAA ANFTRGELAT ALRKLGFLSK
101: LCCSFESFHV LCHASNPYSV NILMAGYDKE AGASLYYIDY IATLHKVDKG AFGYGSYFSL STMDRHFRSD MSVEEAIELV DKCITEIRSR LVIAPPNFVI
201: KIVDKDGART HAWRQSVQDV TTASV

Best Arabidopsis Sequence Match ( AT4G14800.2 )
(BLAST)

001: MECVFGLVGN GFAIVAADTS AVHSILLHKN KEDKIMTLDS HKLVAASGEP GDRVQFTEYV QKNVSLYQFR NGIPLSTAAA ANFTRGELAT ALRKEFCATF
101: QGYSDFCVLM NPYSVNILMA GYDKEAGASL YYIDYIATLH KVDKGAFGYG SYFSLSTMDR HYRSDMSVEE AIELVDKCIL EIRSRLVIAP PNFVIKIVDK
201: DGAREYGWRI STADA

Arabidopsis Description

PBD2Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.