Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G061140.1 | |
| HORVU5Hr1G112850.3 | |
| HORVU6Hr1G076810.1 | |
| HORVU7Hr1G040460.4 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045163_P001 | Maize | mitochondrion | 42.19 | 92.05 |
| GSMUA_Achr9P13230_001 | Banana | cytosol | 95.57 | 90.62 |
| VIT_14s0060g02260.t01 | Wine grape | cytosol | 95.05 | 90.12 |
| GSMUA_Achr5P04520_001 | Banana | cytosol | 94.53 | 89.63 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 100.0 | 88.48 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 100.0 | 88.48 |
| TraesCS3D01G417000.1 | Wheat | cytosol | 99.74 | 88.25 |
| VIT_05s0020g01180.t01 | Wine grape | cytosol | 95.83 | 87.0 |
| KRH33891 | Soybean | endoplasmic reticulum, nucleus | 95.83 | 87.0 |
| KRG92899 | Soybean | cytosol, nucleus | 95.83 | 87.0 |
| KXG31298 | Sorghum | cytosol | 96.35 | 86.45 |
| Solyc01g099760.2.1 | Tomato | nucleus, plastid | 95.05 | 86.29 |
| PGSC0003DMT400063574 | Potato | cytosol | 95.05 | 86.29 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 96.35 | 86.25 |
| Bra001152.1-P | Field mustard | cytosol | 94.79 | 85.85 |
| AT3G05530.1 | Thale cress | cytosol | 94.79 | 85.85 |
| CDY40714 | Canola | cytosol | 94.79 | 85.85 |
| CDY27761 | Canola | cytosol | 94.79 | 85.85 |
| CDY18801 | Canola | cytosol | 94.79 | 85.85 |
| CDY18782 | Canola | cytosol | 94.79 | 85.85 |
| CDX74142 | Canola | cytosol | 94.79 | 85.85 |
| Bra040214.1-P | Field mustard | cytosol | 94.79 | 85.85 |
| Bra039431.1-P | Field mustard | cytosol | 94.79 | 85.85 |
| CDY05176 | Canola | cytosol | 94.79 | 85.85 |
| EER87942 | Sorghum | cytosol | 96.09 | 85.81 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 95.83 | 85.78 |
| KRH68501 | Soybean | nucleus | 91.67 | 82.82 |
| KRG96790 | Soybean | mitochondrion | 67.45 | 78.01 |
| HORVU3Hr1G067470.2 | Barley | cytosol | 28.91 | 48.9 |
| HORVU2Hr1G107280.1 | Barley | cytosol | 39.84 | 41.35 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 44.79 | 39.0 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 42.71 | 38.77 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 45.05 | 38.44 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 42.45 | 38.26 |
| HORVU6Hr1G032570.5 | Barley | cytosol | 40.1 | 37.65 |
| HORVU2Hr1G014000.1 | Barley | cytosol | 39.84 | 37.32 |
| HORVU7Hr1G119300.13 | Barley | cytosol | 38.54 | 36.82 |
| HORVU7Hr1G032070.1 | Barley | cytosol | 42.19 | 36.49 |
| HORVU7Hr1G090380.3 | Barley | cytosol | 41.15 | 36.24 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 42.71 | 35.5 |
| HORVU6Hr1G049800.1 | Barley | cytosol | 4.17 | 28.57 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 15.62 | 23.9 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 15.36 | 23.51 |
| HORVU0Hr1G038060.2 | Barley | cytosol | 31.25 | 22.68 |
| HORVU2Hr1G086170.2 | Barley | cytosol | 31.77 | 21.44 |
| HORVU0Hr1G013350.2 | Barley | cytosol | 12.5 | 15.58 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 31.77 | 15.48 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 31.77 | 15.1 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 31.77 | 14.99 |
| HORVU1Hr1G060370.1 | Barley | cytosol | 31.25 | 14.87 |
| HORVU1Hr1G049910.1 | Barley | cytosol | 31.51 | 14.86 |
| HORVU1Hr1G060340.2 | Barley | cytosol | 31.25 | 14.76 |
| HORVU4Hr1G072010.4 | Barley | cytosol | 31.25 | 14.72 |
| HORVU2Hr1G011690.1 | Barley | cytosol | 31.51 | 14.68 |
| HORVU4Hr1G071960.2 | Barley | cytosol | 30.99 | 14.57 |
| HORVU7Hr1G002880.2 | Barley | plastid | 28.91 | 13.86 |
| HORVU5Hr1G069560.1 | Barley | cytosol | 7.55 | 13.68 |
| HORVU1Hr1G015310.16 | Barley | cytosol, plastid | 30.73 | 11.74 |
| HORVU4Hr1G016200.10 | Barley | cytosol, plastid | 30.73 | 11.73 |
| HORVU2Hr1G104530.9 | Barley | cytosol | 27.86 | 11.72 |
| HORVU6Hr1G053620.1 | Barley | cytosol | 8.33 | 8.91 |
| HORVU7Hr1G058410.7 | Barley | cytosol, peroxisome | 23.7 | 8.22 |
| HORVU5Hr1G078590.8 | Barley | plastid | 22.92 | 7.79 |
| HORVU3Hr1G029660.1 | Barley | cytosol, peroxisome | 0.26 | 2.94 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.5 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | UniProt:A0A287V2I9 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 | GO:GO:0000502 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009987 | GO:GO:0010498 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0036402 | GO:GO:1901800 | EnsemblPlantsGene:HORVU6Hr1G087650 |
| EnsemblPlants:HORVU6Hr1G087650.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | InterPro:PSMC3 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF7 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000B475BEA | : |
Description
No Description!
Coordinates
chrchr6H:-:564699476..564704125
Molecular Weight (calculated)
43008.6 Da
IEP (calculated)
4.721
GRAVY (calculated)
-0.418
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: DELQRNNLEL ENVKDKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDEAE EDGANIDLDS QRKGKCVVLK TSTRQTIFLP VIGLVDPDNL KPGDLVGVNK
101: DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKEI QELVEAIVLP MTHKEQFQKL GIRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ
201: LVQMFIGDGA KLVRDAFELA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN QLDGFSSDER IKVIAATNRA DILDPALLRS GRLDRKIEFP
301: HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV IHEDFNEGII QVQAKKKSSL NYYA
101: DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKEI QELVEAIVLP MTHKEQFQKL GIRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ
201: LVQMFIGDGA KLVRDAFELA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN QLDGFSSDER IKVIAATNRA DILDPALLRS GRLDRKIEFP
301: HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV IHEDFNEGII QVQAKKKSSL NYYA
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.