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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi
Any Predictor:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3B01G372900.1
TraesCS5A01G206600.2
TraesCS5A01G476700.1
TraesCS5B01G204800.1
TraesCS5B01G489600.1
TraesCS5D01G212800.1
TraesCS5D01G490000.1
TraesCS6A01G311800.1
TraesCS6B01G342000.1
TraesCS6D01G291100.1
TraesCS7A01G238900.1
TraesCS7B01G103800.2
TraesCS7D01G199900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05530.1 TraesCS6A01G311800.1 AT1G59900.1 24846764
AT3G05530.1 TraesCS6B01G342000.1 AT1G59900.1 24846764
AT3G05530.1 TraesCS6D01G291100.1 AT1G59900.1 24846764
AT3G05530.1 TraesCS7A01G238900.1 AT1G59900.1 24846764
AT3G05530.1 TraesCS7B01G103800.2 AT1G59900.1 24846764
AT3G05530.1 TraesCS7D01G199900.1 AT1G59900.1 24846764
AT3G05530.1 TraesCS3B01G372900.1 AT3G25860.1 24846764
AT3G05530.1 TraesCS5A01G206600.2 AT3G25860.1 24846764
AT3G05530.1 TraesCS5A01G476700.1 AT3G25860.1 24846764
AT3G05530.1 TraesCS5B01G204800.1 AT3G25860.1 24846764
AT3G05530.1 TraesCS5B01G489600.1 AT3G25860.1 24846764
AT3G05530.1 TraesCS5D01G212800.1 AT3G25860.1 24846764
AT3G05530.1 TraesCS5D01G490000.1 AT3G25860.1 24846764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G421900.1 Wheat cytosol 100.0 100.0
HORVU6Hr1G087650.1 Barley cytosol, plasma membrane 88.48 100.0
TraesCS3D01G417000.1 Wheat cytosol 99.77 99.77
Os02t0803700-01 Rice cytosol, nucleus, plastid 93.32 94.41
KXG31298 Sorghum cytosol 93.09 94.39
Os06t0173100-01 Rice cytosol, nucleus, plasma membrane 93.09 94.17
GSMUA_Achr9P13230_001 Banana cytosol 87.79 94.07
VIT_14s0060g02260.t01 Wine grape cytosol 87.79 94.07
EER87942 Sorghum cytosol 93.09 93.95
GSMUA_Achr5P04520_001 Banana cytosol 87.33 93.58
VIT_05s0020g01180.t01 Wine grape cytosol 91.01 93.38
KRG92899 Soybean cytosol, nucleus 90.32 92.67
CDY27761 Canola cytosol 90.32 92.45
CDY05176 Canola cytosol 90.32 92.45
Bra039431.1-P Field mustard cytosol 90.32 92.45
KRH33891 Soybean endoplasmic reticulum, nucleus 90.09 92.44
CDY40714 Canola cytosol 90.09 92.22
CDY18801 Canola cytosol 90.09 92.22
AT3G05530.1 Thale cress cytosol 90.09 92.22
CDY18782 Canola cytosol 90.09 92.22
CDX74142 Canola cytosol 90.09 92.22
Bra040214.1-P Field mustard cytosol 90.09 92.22
Bra001152.1-P Field mustard cytosol 90.09 92.22
Zm00001d045163_P001 Maize mitochondrion 37.33 92.05
TraesCS7B01G036400.1 Wheat cytosol 90.55 92.04
Solyc01g099760.2.1 Tomato nucleus, plastid 89.4 91.73
PGSC0003DMT400063574 Potato cytosol 89.4 91.73
KRH68501 Soybean nucleus 85.25 87.06
KRG96790 Soybean mitochondrion 62.67 81.93
TraesCS7B01G280400.1 Wheat cytosol, unclear 37.79 41.0
TraesCS2B01G105700.1 Wheat cytosol 41.71 40.31
TraesCS4B01G189200.1 Wheat cytosol 41.71 40.22
TraesCS6B01G207100.1 Wheat cytosol 38.25 39.71
TraesCS6B01G376500.1 Wheat golgi 38.94 39.67
TraesCS7B01G060900.1 Wheat golgi 38.94 39.67
TraesCS6B01G188500.1 Wheat cytosol 36.18 39.25
TraesCS7B01G254400.1 Wheat cytosol 38.25 39.24
TraesCS2B01G100400.1 Wheat cytosol, plastid 37.1 38.8
TraesCS2B01G499600.1 Wheat cytosol 36.87 38.37
TraesCS7B01G468900.1 Wheat cytosol 35.02 38.19
TraesCS2B01G493900.1 Wheat cytosol 35.25 33.77
TraesCS2B01G494200.1 Wheat cytosol 34.33 32.68
TraesCS2B01G373100.1 Wheat cytosol 29.26 22.32
TraesCS1B01G235400.1 Wheat cytosol 28.11 19.0
TraesCS3B01G171400.1 Wheat cytosol 28.57 17.06
TraesCS3B01G172100.1 Wheat cytosol 30.41 16.71
TraesCS3B01G154400.1 Wheat cytosol 29.95 16.5
TraesCS1B01G419200.1 Wheat cytosol 29.95 16.48
TraesCS1B01G259200.1 Wheat cytosol 29.95 16.48
TraesCS3B01G171200.1 Wheat cytosol 29.49 16.24
TraesCS3B01G172000.1 Wheat cytosol 28.57 15.82
TraesCS1B01G192400.1 Wheat cytosol 29.26 15.72
TraesCS1B01G235300.1 Wheat cytosol 28.8 15.62
TraesCS1B01G235500.1 Wheat cytosol 28.57 15.5
TraesCS4B01G268400.1 Wheat golgi 29.03 15.5
TraesCS3B01G487900.1 Wheat mitochondrion 26.5 15.44
TraesCS4B01G268200.1 Wheat cytosol 29.03 15.42
TraesCS3B01G171300.1 Wheat cytosol 23.04 13.72
TraesCS1B01G089700.1 Wheat cytosol, plastid 28.57 12.64
TraesCS4B01G108300.1 Wheat plastid 28.8 12.5
TraesCS2B01G480000.3 Wheat mitochondrion 26.04 12.11
TraesCS5B01G323100.1 Wheat cytosol 16.13 12.05
TraesCS7B01G174800.1 Wheat cytosol 20.97 8.83
TraesCS5B01G299200.1 Wheat mitochondrion 21.66 8.59
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.5Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_corencoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0030163GO:GO:0036402InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674InterPro:PSMC3
PANTHER:PTHR23073PANTHER:PTHR23073:SF7SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242EnsemblPlantsGene:TraesCS3B01G457100
EnsemblPlants:TraesCS3B01G457100.1TIGR:cd00009SEG:seg:::
Description
No Description!
Coordinates
chr3B:-:698421986..698429141
Molecular Weight (calculated)
48256.6 Da
IEP (calculated)
4.557
GRAVY (calculated)
-0.412
Length
434 amino acids
Sequence
(BLAST)
001: MSSSPTPAPD AGAAAMAVDD SSETDQLDSM STEDIVRATR LLDNEVRVLK DELQRNNLEL ENVKDKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDEAE
101: EDGANIDLDS QRKGKCVVLK TSTRQTIFLP VIGLVDPDNL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKEI QELVEAIVLP
201: MTHKEQFQKL GIRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFELA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE
301: VQRTMLELLN QLDGFSSDER IKVIAATNRA DILDPALLRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM
401: LALRRDATEV IHEDFNEGII QVQAKKKSSL NYYA
Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.