Factsheet for TraesCS5B01G299200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G306600.2	Wheat	mitochondrion	96.89	96.89
TraesCS5A01G301500.1	Wheat	mitochondrion	93.33	94.89
HORVU5Hr1G078590.8	Barley	plastid	92.5	89.56
HORVU0Hr1G013350.2	Barley	cytosol	24.95	88.64
TraesCS7B01G174800.1	Wheat	cytosol	51.19	54.37
GSMUA_Achr11P...	Banana	cytosol	52.1	50.85
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	47.62	45.94
CDX69950	Canola	cytosol	44.88	44.96
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	46.34	44.95
CDY62119	Canola	cytosol	44.7	44.78
Bra009342.1-P	Field mustard	cytosol	45.06	43.98
KRH50491	Soybean	cytosol	44.97	43.54
AT5G08470.1	Thale cress	cytosol	44.88	43.45
TraesCS2B01G373100.1	Wheat	cytosol	14.53	27.94
TraesCS1B01G235400.1	Wheat	cytosol	15.9	27.1
TraesCS2B01G499600.1	Wheat	cytosol	9.87	25.9
TraesCS2B01G100400.1	Wheat	cytosol, plastid	9.78	25.78
TraesCS6B01G188500.1	Wheat	cytosol	9.32	25.5
TraesCS6B01G207100.1	Wheat	cytosol	9.69	25.36
TraesCS7B01G254400.1	Wheat	cytosol	9.69	25.06
TraesCS3B01G171400.1	Wheat	cytosol	16.54	24.9
TraesCS7B01G280400.1	Wheat	cytosol, unclear	9.05	24.75
TraesCS1B01G235300.1	Wheat	cytosol	17.64	24.12
TraesCS3B01G154400.1	Wheat	cytosol	17.37	24.11
TraesCS3B01G172000.1	Wheat	cytosol	17.28	24.11
TraesCS3B01G171200.1	Wheat	cytosol	17.28	23.98
TraesCS1B01G419200.1	Wheat	cytosol	17.28	23.95
TraesCS1B01G259200.1	Wheat	cytosol	17.28	23.95
TraesCS7B01G468900.1	Wheat	cytosol	8.68	23.87
TraesCS1B01G235500.1	Wheat	cytosol	17.28	23.62
TraesCS4B01G189200.1	Wheat	cytosol	9.69	23.56
TraesCS3B01G172100.1	Wheat	cytosol	17.0	23.54
TraesCS4B01G268400.1	Wheat	golgi	17.18	23.12
TraesCS4B01G268200.1	Wheat	cytosol	17.18	23.01
TraesCS7B01G060900.1	Wheat	golgi	8.96	23.0
TraesCS2B01G105700.1	Wheat	cytosol	9.41	22.94
TraesCS1B01G192400.1	Wheat	cytosol	16.91	22.9
TraesCS3B01G487900.1	Wheat	mitochondrion	15.54	22.82
TraesCS6B01G376500.1	Wheat	golgi	8.87	22.77
TraesCS2B01G494200.1	Wheat	cytosol	9.23	22.15
TraesCS2B01G493900.1	Wheat	cytosol	9.05	21.85
TraesCS3B01G457100.1	Wheat	cytosol, golgi	8.59	21.66
TraesCS2B01G480000.3	Wheat	mitochondrion	18.46	21.65
TraesCS7B01G036400.1	Wheat	cytosol	8.41	21.55
TraesCS3B01G171300.1	Wheat	cytosol	14.35	21.54
TraesCS4B01G108300.1	Wheat	plastid	18.56	20.3
TraesCS1B01G089700.1	Wheat	cytosol, plastid	18.1	20.18
TraesCS5B01G323100.1	Wheat	cytosol	10.33	19.45

Protein Annotations

Gene3D:1.10.8.60	MapMan:23.4.1.5.1.1	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	InterPro:CDC48_domain_2-like_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0005778	GO:GO:0006625	GO:GO:0006810	GO:GO:0007031	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0042623	InterPro:P-loop_NTPase	InterPro:PEX-N_psi_beta-barrel
PFAM:PF00004	PFAM:PF09262	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF12	InterPro:Pex1
SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF54585	EnsemblPlantsGene:TraesCS5B01G299200	EnsemblPlants:TraesCS5B01G299200.1	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:482423894..482432139

Molecular Weight (calculated)

120012.0 Da

IEP (calculated)

6.259

GRAVY (calculated)

-0.079

Length

1094 amino acids

Sequence
(BLAST)

0001: MEVVVRTVPG GRSCFVALPL PVIQALERTA AAGSLPAVLA LELRGPDGAR WRLAWAGAVS ASASPDAVEV SQQFAACISL PDSTKASLSA ISVLPKAKFV
0101: SVEPISEEDW EVLELNSELA EEAILKQVGI IYDGMKFPLW LHGHNVVEFL VISASPSNSI VQLVPGTEVA VAPKKRKGDA NSIECAPKQD LLKAQPHKKA
0201: LLRVQEAGGK YVDRFEYNGI QLGVFVTYAV QIHPDTAVKL SLSNLQLVSI TPKFSPKDST ENGKGSDQQI KGSVPGMKKN RHIVVHIILS DSVAKEHIML
0301: PQSIRCYIGT CVHAWVYVQR FSPAVNKNTP SITIRPLHFK MLERNSDNNS ALDCQEQDIF PTLGEISLAD DPLADDNISM SRGFNDITAA ANWEESVKLK
0401: QERSFIRSWL IGQLKGISSH IAQPELNTVL LPSETLLHFQ VIDQSRGGPV DLIYLLTTTS DFGVKHKKNE LVTATEYGID NFEQALQKLE LNKAISLDST
0501: MERARKFFDR GLSSLSWLEN EFSDIEKRLS VLLSSASLKL LSRIKCPYPG NVLVYGPPGS GKTTLCKAVA RHFEEHKEIL AHVVYVDCSK LATEKNKKQL
0601: QQIADYIYEA IVHSPSVVIF DDLDSLISFS PDNLKSQSSN SSAIVKYLID MLDEYRDKSH GMCGYGPVSF LASAKSLKCL PQELTSSGRF DLHVQVPGLS
0701: VSARIEILRQ TIVKLHLLCS AEIISNIASK CDGYDAYDLE ILVDNAVLAA SDRLLGSSTV NLVEEDFLKA MRNFSPVAMR DISKFSPEIS NGWEDVGGLS
0801: EVVNIIKETI ELPLKYPKFF VGAPVRLRSN ILLYGPTGCG KTHVVKSVAA AYSLRFIPIK GPELMNMYIG STEQYVRDTF AKAAAAAPCL LFFDEFESLV
0901: PQRGKHGTQV TDRVVNQFLT ELDGVEALTG VFVFAATNKP REIDAALLRP GRFDRLVFCD FPQKNERLDI LRVLSKELPL ASDADLELVA SMTEGFSGAD
1001: LKAILTDAGL EAAKEAVRCQ PGDGIGDIPQ ELPLIARGTL MSVASEARPS TSEEDRRSLR EMFSQFSTSR KSSISTEKRR EANGQGQRVA VAES

Best Arabidopsis Sequence Match ( AT5G08470.1 )
(BLAST)

0001: MSRNRQIIIP DDVMETEAVV NTVAGVDCFV SLPRQLLHAL QSTSSSPLPP LLPVELRSGD RRWSVAWSGS SSSSSAIEIA RVFAESISLP DGTVVKVRVL
0101: PNVPKATLVT VEPETEDDWE VLELNAELAE AAILSQVRIL HETMKFPLWL HDRTVIRFSV VSTFPSKGVV QLVPGTEVAV APKRRDRNLK AKKSQEKECN
0201: NVKALLRVQE TDRSAFHEAD VKGFELRVAL TSIAYIHPET AKKHSLESLQ LISVSPRIPL KGSAKKDEAL NMKNSEASKV AENGTSSAKK EPRQAILRLV
0301: FSDLAAKGHL MMVESLRLYL GAGLHSWVYL RGCNVNEDKE IPALSLSPCV FKISENEKVL DKGTDRLGNN NSVRKSSHPP SGLSTYVDVV DWSVHDKVVT
0401: ALSSEGLHDE GNHDKNKKGL EYLTRLWSLA QLDAMASVTG VDVSSLIVGR ETFFHFEVRG LESYKSIDGQ PSVNDRWESG KKDKHTPLEI LYVMTVSDES
0501: LLGDKFAGYD LSLDRSEKSD NVVHIEPVLE KMNLGEPIYL KSAKETHCNK GVSPDISSLT WMGPIVSDVI KRMTVLLSPA AGMWFSKFKI PSPGHILIYG
0601: PPGSGKTILA RAAAKYFEEQ KDLLAHVILV SCSTLALEKV QHIHHVLSSV IAEGLEHAPS VIILDDLDSI ISSSSDTEGT QASVGVTMLT KFLTDVIDDY
0701: GEYRNSSCGI GPLAFVASVQ SLEQIPQTLS SSGRFDFHVQ LAAPATSERG AILKHEIQKR LLDCSEDILL NLAAKCEGYD AYDLEILVDR AVHAAIGRHL
0801: PLESNISKYN LVKEDFTRAM HDFVPVAMRD ITKSASEGGR LGWEDVGGVT DIKNAIKEMI ELPSKFPKIF AKSPLRLRSN VLLYGPPGCG KTHIVGAAAA
0901: ACSLRFISVK GPELLNKYIG ASEQAVRDIF SKAAAAAPCI LFFDEFDSIA PKRGHDNTGV TDRVVNQFLT ELDGVEVLTG VFVFAATSRP DLLDPALLRP
1001: GRLDRLLLCD FPSPPERLEI LTVLSRKLLM ADDIDLEPIA LMTEGFSGAD LQALLSDAQL AAVHEYLNRE DKPETGTTPI ITDPLLKSIA SKTKPSVSET
1101: EKQKLYDIYS QFLDSRKSSR EAKGKRATLA

Arabidopsis Description

PEX1Peroxisome biogenesis protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.