Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G178400.1 | |
| TraesCS6B01G205800.2 | |
| TraesCS6D01G166200.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19990.1 | TraesCS6A01G178400.1 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | TraesCS6B01G205800.2 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | TraesCS6D01G166200.2 | AT5G19960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G350300.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 100.0 | 100.0 |
| EES06492 | Sorghum | cytosol | 95.51 | 95.73 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 94.33 | 95.45 |
| GSMUA_Achr10P... | Banana | cytosol | 91.49 | 92.14 |
| AT5G19990.1 | Thale cress | cytosol | 91.25 | 92.12 |
| CDX70903 | Canola | cytosol | 90.54 | 92.07 |
| CDY35832 | Canola | cytosol | 91.02 | 91.89 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 90.54 | 91.85 |
| Solyc05g018590.2.1 | Tomato | nucleus | 90.54 | 91.85 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 90.31 | 91.61 |
| Bra002279.1-P | Field mustard | cytosol | 90.54 | 91.41 |
| VIT_04s0008g04690.t01 | Wine grape | cytosol | 90.54 | 91.19 |
| Bra006529.1-P | Field mustard | cytosol | 90.31 | 91.17 |
| AT5G20000.1 | Thale cress | cytosol | 89.6 | 90.45 |
| KRH46990 | Soybean | nucleus | 89.36 | 90.43 |
| KRH44668 | Soybean | cytosol, mitochondrion, nucleus | 89.36 | 90.43 |
| PGSC0003DMT400038718 | Potato | cytosol | 80.14 | 78.29 |
| CDX88865 | Canola | cytosol, extracellular | 86.52 | 58.19 |
| CDY42324 | Canola | cytosol, extracellular | 90.54 | 53.42 |
| CDY44958 | Canola | cytosol, plasma membrane | 90.78 | 53.26 |
| Bra020079.1-P | Field mustard | cytosol | 90.54 | 53.12 |
| TraesCS6B01G376500.1 | Wheat | golgi | 46.34 | 46.01 |
| TraesCS7B01G060900.1 | Wheat | golgi | 45.63 | 45.31 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 40.43 | 42.75 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 40.43 | 42.75 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 39.48 | 41.96 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 41.61 | 39.11 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 41.37 | 38.98 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 39.01 | 38.64 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 39.24 | 38.25 |
| TraesCS2B01G100400.1 | Wheat | cytosol, plastid | 37.12 | 37.83 |
| TraesCS2B01G499600.1 | Wheat | cytosol | 36.88 | 37.41 |
| TraesCS2B01G493900.1 | Wheat | cytosol | 38.53 | 35.98 |
| TraesCS2B01G494200.1 | Wheat | cytosol | 38.77 | 35.96 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 29.55 | 21.97 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 26.24 | 17.29 |
| TraesCS3B01G487900.1 | Wheat | mitochondrion | 28.84 | 16.38 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 27.66 | 16.09 |
| TraesCS4B01G268400.1 | Wheat | golgi | 29.55 | 15.38 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 28.61 | 15.32 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 28.37 | 15.23 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 28.37 | 15.21 |
| TraesCS4B01G268200.1 | Wheat | cytosol | 29.31 | 15.18 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 28.13 | 15.08 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 27.9 | 14.97 |
| TraesCS1B01G192400.1 | Wheat | cytosol | 28.37 | 14.85 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 27.42 | 14.8 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 27.66 | 14.62 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 27.19 | 14.38 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 21.75 | 12.62 |
| TraesCS2B01G480000.3 | Wheat | mitochondrion | 27.19 | 12.33 |
| TraesCS1B01G089700.1 | Wheat | cytosol, plastid | 27.66 | 11.93 |
| TraesCS4B01G108300.1 | Wheat | plastid | 27.66 | 11.7 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 24.11 | 9.9 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 13.48 | 9.81 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 25.06 | 9.69 |
| Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.6 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF57 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS7B01G254400 | EnsemblPlants:TraesCS7B01G254400.1 | TIGR:cd00009 | SEG:seg |
Description
No Description!
Coordinates
chr7B:-:468851805..468854435
Molecular Weight (calculated)
47123.6 Da
IEP (calculated)
9.507
GRAVY (calculated)
-0.309
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVAMDIAK PSALPASVDD PSAASAKGRA GGGEGLRQYY LQHIHDLQLQ IRTKTHNLNR LEAQRNDLNS RVRMLREELQ LLQEPGSYVG EVVKVMGKSK
101: VLVKVHPEGK YVVDLDKSID ITKITPSTRV ALRNDSYMLH LILPSKVDPL VNLMKVEKVP DSTYDMIGGL DQQIKEIKEV IELPIKHPEL FESLGIAQPK
201: GVLLYGPPGT GKTLLARAVA HHTDCTFIRV SGSELVQKYI GEGSRMVREL FVMAREHAPS IIFMDEIDSI GSARMESGSG NGDSEVQRTM LELLNQLDGF
301: EASNKIKVLM ATNRIDILDQ ALLRPGRIDR KIEFPNPNAD SRGDILKIHS RKMNLMRGID LKKIAEKMNG ASGAELKAVC TEAGMFALRE RRVHVTQEDF
401: EMAVAKVMKK DTEKNMSLRK LWK
101: VLVKVHPEGK YVVDLDKSID ITKITPSTRV ALRNDSYMLH LILPSKVDPL VNLMKVEKVP DSTYDMIGGL DQQIKEIKEV IELPIKHPEL FESLGIAQPK
201: GVLLYGPPGT GKTLLARAVA HHTDCTFIRV SGSELVQKYI GEGSRMVREL FVMAREHAPS IIFMDEIDSI GSARMESGSG NGDSEVQRTM LELLNQLDGF
301: EASNKIKVLM ATNRIDILDQ ALLRPGRIDR KIEFPNPNAD SRGDILKIHS RKMNLMRGID LKKIAEKMNG ASGAELKAVC TEAGMFALRE RRVHVTQEDF
401: EMAVAKVMKK DTEKNMSLRK LWK
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Arabidopsis Description
RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.