Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35832 | Canola | cytosol | 98.57 | 98.57 |
| Bra002279.1-P | Field mustard | cytosol | 98.09 | 98.09 |
| CDX70903 | Canola | cytosol | 96.9 | 97.6 |
| Bra006529.1-P | Field mustard | cytosol | 96.9 | 96.9 |
| AT5G20000.1 | Thale cress | cytosol | 96.66 | 96.66 |
| GSMUA_Achr7P09950_001 | Banana | cytosol | 90.45 | 94.04 |
| KRH44668 | Soybean | cytosol, mitochondrion, nucleus | 92.84 | 93.06 |
| Solyc05g018590.2.1 | Tomato | nucleus | 92.36 | 92.81 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 92.12 | 92.57 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 92.12 | 92.34 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 92.12 | 92.34 |
| TraesCS6A01G177600.1 | Wheat | cytosol | 92.12 | 92.34 |
| KRH46990 | Soybean | nucleus | 92.12 | 92.34 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 91.89 | 92.33 |
| Zm00001d053616_P002 | Maize | cytosol | 92.84 | 92.18 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 92.6 | 91.94 |
| Os02t0205300-01 | Rice | cytosol | 92.84 | 91.75 |
| TraesCS7D01G350300.1 | Wheat | cytosol | 92.12 | 91.25 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 92.12 | 91.25 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 92.12 | 91.25 |
| HORVU7Hr1G084550.2 | Barley | cytosol | 92.12 | 91.25 |
| Os06t0600100-01 | Rice | plasma membrane | 87.59 | 86.76 |
| EER88603 | Sorghum | cytosol | 84.49 | 84.49 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 92.12 | 83.55 |
| PGSC0003DMT400038718 | Potato | cytosol | 81.62 | 78.98 |
| CDX88865 | Canola | cytosol, extracellular | 92.84 | 61.84 |
| CDY42324 | Canola | cytosol, extracellular | 98.09 | 57.32 |
| CDY44958 | Canola | cytosol, plasma membrane | 98.57 | 57.28 |
| Bra020079.1-P | Field mustard | cytosol | 98.33 | 57.14 |
| AT1G53750.1 | Thale cress | cytosol | 45.82 | 45.07 |
| AT5G43010.1 | Thale cress | cytosol | 42.0 | 44.11 |
| AT1G45000.1 | Thale cress | cytosol | 41.53 | 43.61 |
| AT3G05530.1 | Thale cress | cytosol | 40.81 | 40.33 |
| AT1G09100.1 | Thale cress | cytosol | 40.33 | 39.95 |
| AT5G58290.1 | Thale cress | cytosol | 38.42 | 39.46 |
| AT2G20140.1 | Thale cress | cytosol | 41.05 | 38.83 |
| AT4G29040.1 | Thale cress | cytosol | 41.05 | 38.83 |
| AT1G53780.2 | Thale cress | cytosol | 44.87 | 30.32 |
| AT2G03670.1 | Thale cress | cytosol | 27.21 | 18.91 |
| AT3G09840.1 | Thale cress | cytosol | 28.88 | 14.96 |
| AT5G03340.1 | Thale cress | cytosol | 28.88 | 14.94 |
| AT3G53230.1 | Thale cress | cytosol | 28.88 | 14.85 |
| AT3G01610.2 | Thale cress | nucleus | 27.45 | 13.86 |
| AT1G03000.1 | Thale cress | mitochondrion | 27.45 | 12.22 |
| AT3G56690.1 | Thale cress | cytosol, plastid | 29.59 | 12.13 |
| AT5G08470.1 | Thale cress | cytosol | 27.21 | 10.09 |
| Os06t0600301-00 | Rice | plasma membrane | 1.67 | 3.1 |
| Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.6 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | EntrezGene:832121 |
| UniProt:A0A178UGX7 | InterPro:AAA+_ATPase | EMBL:AB044348 | ProteinID:AED92777.1 | EMBL:AF123395 | EMBL:AF296836 |
| ProteinID:ANM69329.1 | ArrayExpress:AT5G19990 | EnsemblPlantsGene:AT5G19990 | RefSeq:AT5G19990 | TAIR:AT5G19990 | RefSeq:AT5G19990-TAIR-G |
| EnsemblPlants:AT5G19990.1 | TAIR:AT5G19990.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY065174 | EMBL:BT009668 |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0017025 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 |
| GO:GO:0031597 | GO:GO:0036402 | GO:GO:0045899 | GO:GO:1901800 | RefSeq:NP_001318606.1 | RefSeq:NP_568389.1 |
| ProteinID:OAO93043.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PO:PO:0000293 | ScanProsite:PS00674 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF57 | UniProt:Q9C5U3 | Symbol:RPT6A | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 |
| UniParc:UPI00000A1F09 | SEG:seg | : | : | : | : |
Description
RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
Coordinates
chr5:+:6751798..6755293
Molecular Weight (calculated)
47250.8 Da
IEP (calculated)
9.368
GRAVY (calculated)
-0.390
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.