Factsheet for Os06t0600100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0205300-01	Rice	cytosol	89.13	88.92
VIT_04s0008g04690.t01	Wine grape	cytosol	87.0	87.62
AT5G19990.1	Thale cress	cytosol	86.76	87.59
VIT_09s0002g05800.t01	Wine grape	cytosol	86.29	87.53
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	86.29	87.53
CDX70903	Canola	cytosol	86.05	87.5
CDY35832	Canola	cytosol	86.52	87.35
GSMUA_Achr10P...	Banana	cytosol	86.52	87.14
Solyc05g018590.2.1	Tomato	nucleus	85.82	87.05
Bra002279.1-P	Field mustard	cytosol	86.05	86.87
KRH44668	Soybean	cytosol, mitochondrion, nucleus	85.82	86.84
Bra006529.1-P	Field mustard	cytosol	85.58	86.4
AT5G20000.1	Thale cress	cytosol	85.34	86.16
KRH46990	Soybean	nucleus	85.11	86.12
PGSC0003DMT400038718	Potato	cytosol	76.36	74.6
Os02t0784700-00	Rice	cytosol	24.59	55.32
CDX88865	Canola	cytosol, extracellular	81.8	55.01
CDY42324	Canola	cytosol, extracellular	86.05	50.77
CDY44958	Canola	cytosol, plasma membrane	86.05	50.49
Bra020079.1-P	Field mustard	cytosol	85.82	50.35
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	43.97	43.66
Os02t0199900-01	Rice	nucleus, plasma membrane	40.19	42.5
Os06t0607800-01	Rice	nucleus	40.19	42.39
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	40.43	39.86
Os02t0803700-01	Rice	cytosol, nucleus, plastid	40.19	39.63
Os04t0284600-01	Rice	cytosol	33.1	39.22
Os03t0298400-01	Rice	plasma membrane	41.61	39.11
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	41.13	38.84
Os02t0325100-01	Rice	plastid	38.06	38.42
Os09t0560200-01	Rice	cytosol, mitochondrion	34.52	32.59
Os05t0376200-00	Rice	cytosol	25.53	27.62
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	10.17	22.05
Os04t0498800-01	Rice	cytosol	28.84	21.11
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	29.31	15.33
Os06t0109400-01	Rice	cytosol	27.42	15.06
Os08t0413000-00	Rice	mitochondrion	28.37	13.27
Os04t0617600-01	Rice	cytosol	26.24	11.81
Os08t0556550-01	Rice	cytosol	2.6	10.28
Os06t0600301-00	Rice	plasma membrane	1.65	3.1
Os11t0220400-01	Rice	mitochondrion	1.18	1.07
Os08t0556400-01	Rice	endoplasmic reticulum, golgi, plasma membrane	0.24	0.14
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:4341448
InterPro:AAA+_ATPase	EMBL:AK065619	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:BAD32833.1	ProteinID:BAD32954.1
ProteinID:BAF19913.1	ProteinID:BAS98488.1	ncoils:Coil	ProteinID:EEE65971.1	GO:GO:0000166	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163
GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800
EnsemblPlantsGene:Os06g0600100	EnsemblPlants:Os06t0600100-01	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073
PANTHER:PTHR23073:SF57	UniProt:Q69X47	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00003FF258
RefSeq:XP_015641117.1	SEG:seg	:	:	:	:

Description

Similar to TAT-binding protein homolog (Fragment). (Os06t0600100-01)

Coordinates

chr6:+:23685179..23688096

Molecular Weight (calculated)

46824.1 Da

IEP (calculated)

9.513

GRAVY (calculated)

-0.289

Length

423 amino acids

Sequence
(BLAST)

001: MATADVSRPS SSAPTAAAAG ADGHGAKGSA FRGDGLRPYY QSRIHDLQLQ IRQGTDNLSR LEAQRNVLNS QVITLGEELK VLHEPGSYVG EVVKVMGKSK
101: VLVKVHPEGK YVVDVDKSID ITKLSPSTRV ALRNDSYMLH LILPSKVDPL VNLMKVEKVP DSTYDMIGGL DQQIKEIKEV IELPIKHPEL FESLGIAQPK
201: GVLLYGPPGT GKTLLARAVA HHTDCTFIRV SGSELVQKYI GEGSRMVREL FVMAREHAPS IIFMDEIDSI GSARMQSGSG GGDSEVQRTM LELLNQLDGF
301: EASNKIKVLM ATNRMDILDQ ALLRPGRIDR KIEFPNPNED SRFDILKIHS RKMNLMRGID LKKIAEKMNG ASGAELKAVC TEAGMFALRE RRVHVNQEDF
401: LMAVAKVMKK DTEKNMSLRK LWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.