Factsheet for Os08t0413000-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 4
mitochondrion 5
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G053620.1	Barley	cytosol	30.42	76.6
HORVU5Hr1G069560.1	Barley	cytosol	17.92	76.42
EES14976	Sorghum	cytosol	66.48	75.88
Zm00001d050303_P001	Maize	cytosol	65.71	75.19
HORVU2Hr1G011690.1	Barley	cytosol	66.92	73.42
TraesCS2A01G060000.1	Wheat	cytosol	69.14	72.34
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	58.63	65.51
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	11.28	52.31
Os05t0376200-00	Rice	cytosol	17.92	41.43
Os04t0498800-01	Rice	cytosol	24.67	38.58
Os06t0109400-01	Rice	cytosol	28.21	33.12
Os02t0784700-00	Rice	cytosol	6.86	32.98
Os02t0199900-01	Rice	nucleus, plasma membrane	14.16	32.0
Os06t0607800-01	Rice	nucleus	13.72	30.92
Os04t0284600-01	Rice	cytosol	12.17	30.81
Os02t0325100-01	Rice	plastid	14.16	30.55
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	14.27	30.28
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	13.72	28.9
Os02t0803700-01	Rice	cytosol, nucleus, plastid	13.5	28.44
Os06t0600100-01	Rice	plasma membrane	13.27	28.37
Os02t0205300-01	Rice	cytosol	13.27	28.3
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	13.83	27.9
Os03t0298400-01	Rice	plasma membrane	13.83	27.78
Os09t0560200-01	Rice	cytosol, mitochondrion	13.5	27.23
Os04t0617600-01	Rice	cytosol	22.23	21.38
Os08t0556550-01	Rice	cytosol	2.43	20.56
Os11t0220400-01	Rice	mitochondrion	6.31	12.18
Os06t0600301-00	Rice	plasma membrane	0.77	3.1
Os08t0556400-01	Rice	endoplasmic reticulum, golgi, plasma membrane	0.55	0.72

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	UniProt:A0A0P0XFK3
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	ProteinID:BAT05416.1
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0051301	EnsemblPlantsGene:Os08g0413000	EnsemblPlants:Os08t0413000-00	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359
PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF73	SMART:SM00382	SMART:SM01072
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI000393B643
SEG:seg	:	:	:	:	:

Description

Similar to Valosin-containing protein (Fragment). (Os08t0413000-00)

Coordinates

chr8:-:19757076..19760970

Molecular Weight (calculated)

99426.8 Da

IEP (calculated)

5.662

GRAVY (calculated)

-0.260

Length

904 amino acids

Sequence
(BLAST)

001: MSTYRTLIKH MHAIRPVLIY RYKRTIDLIS LDPRIAPGIL FRRPAAANLI IISIADMADA DVSSSKTTTA RDYSTAILEC AKKKSPNRLM ADDAEGGVAV
101: DNSTVTLSEA TMEELGIFRG DLVTLRGRRR REAVCYAQKD ESCPDGRLRL SRGVRSNLHV RLGDLVTVKP CPTIRNAKRV QLRPFDDSVE GISGDLFEPY
201: LKPYFMDALR PVKKGDRFLV RGHMHAVEFK VMDTEPNNEP VIVAGDTEIF CDEGDPVKRE DEERLDGPGY DDVGGVRKQL AQIRELVELP LRHPKLFQTL
301: GVRPPKGILL YGPPGTGKTL LARAIAAESG AHFVVVNGPE IMSGMPGESE ANLRAVFAEA DAAAPSIVFM DEIDSIAPSR EKAHGEVERR VVSQLLTLMD
401: GLRPRAQVIV IGATNRPNSL DPALRRFGRF DRELDIGVPD ELGRLEILRI HTKNMPLSDD VDLERVGKDT HGFVGSDLAS LCSEAAMQCI REKLDIIDIE
501: NDTIDVEILN SLTVTMDHLK FAMEVTKPSA LRETGIVEVP KVSWDDIGGL GEVKRELQET VQYPVEHPEM FDLFGMSPSR GVLFYGPPGC GKTMMAKAIA
601: KECKANFISI KGPELLTMWF GESEGNVRNL FDKARQSAPC ILFFDELDSI AVKRGNSVGD AGGTPDRVLN QLLTEMDGIN AKKTVFVIGA TNRPDIIDPA
701: MLRPGRLDQL IYIPLPDASS RLEIFRANLR KAPMSRHVDL PAMAASTDGF SGADIKEICQ RACKLAVREV VQKSTLVGKA LAMAGAELTV DHFKSAMKHA
801: RKSVSELDVI KYEYFKHKFS GGIPDEEEAP ATEPELPVGQ LRLVAKPKTK TKAELEAEAE AAAKAKAEAE AKAKAKLKGK AVAVDDDDDD STYSMDSMDE
901: DLLY

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.