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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 18022940
plasma membrane: 27800704
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0739600-01
Os02t0739700-01
Os06t0246500-01
Os08t0431300-01
Os09t0408600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05530.1 Os02t0739600-01 AT1G59900.1 24846764
AT3G05530.1 Os02t0739700-01 AT1G59900.1 24846764
AT3G05530.1 Os06t0246500-01 AT1G59900.1 24846764
AT3G05530.1 Os08t0431300-01 AT3G25860.1 24846764
AT3G05530.1 Os09t0408600-01 AT3G25860.1 24846764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P13230_001 Banana cytosol 91.61 97.04
Os02t0803700-01 Rice cytosol, nucleus, plastid 96.97 96.97
HORVU6Hr1G087650.1 Barley cytosol, plasma membrane 86.25 96.35
VIT_14s0060g02260.t01 Wine grape cytosol 90.44 95.8
VIT_05s0020g01180.t01 Wine grape cytosol 94.17 95.51
KRG92899 Soybean cytosol, nucleus 93.71 95.04
KRH33891 Soybean endoplasmic reticulum, nucleus 93.47 94.8
TraesCS7B01G036400.1 Wheat cytosol 93.71 94.15
Solyc01g099760.2.1 Tomato nucleus, plastid 92.54 93.85
PGSC0003DMT400063574 Potato cytosol 92.54 93.85
Bra039431.1-P Field mustard cytosol 92.31 93.4
CDY05176 Canola cytosol 92.31 93.4
CDY27761 Canola cytosol 92.31 93.4
Bra001152.1-P Field mustard cytosol 92.07 93.16
AT3G05530.1 Thale cress cytosol 92.07 93.16
Bra040214.1-P Field mustard cytosol 92.07 93.16
CDX74142 Canola cytosol 92.07 93.16
CDY40714 Canola cytosol 92.07 93.16
CDY18782 Canola cytosol 92.07 93.16
CDY18801 Canola cytosol 92.07 93.16
TraesCS3B01G457100.1 Wheat cytosol, golgi 94.17 93.09
TraesCS3A01G421900.1 Wheat cytosol 94.17 93.09
TraesCS7D01G134800.1 Wheat cytosol 93.01 93.01
TraesCS3D01G417000.1 Wheat cytosol 93.94 92.86
KRH68501 Soybean nucleus 88.34 89.18
KRG96790 Soybean mitochondrion 64.8 83.73
Os04t0284600-01 Rice cytosol 55.71 66.95
Os02t0784700-00 Rice cytosol 22.14 50.53
Os06t0600100-01 Rice plasma membrane 39.86 40.43
Os07t0691800-01 Rice cytosol, nucleus, plasma membrane, plastid 41.96 40.18
Os02t0199900-01 Rice nucleus, plasma membrane 37.3 40.0
Os03t0298400-01 Rice plasma membrane 41.72 39.78
Os06t0192600-01 Rice cytosol, nucleus, plasma membrane, plastid 39.39 39.67
Os02t0205300-01 Rice cytosol 39.16 39.62
Os06t0607800-01 Rice nucleus 36.6 39.15
Os02t0325100-01 Rice plastid 37.53 38.42
Os09t0560200-01 Rice cytosol, mitochondrion 33.8 32.37
Os05t0376200-00 Rice cytosol 24.71 27.11
Os10t0442600-01 Rice cytosol, nucleus, plasma membrane, plastid 10.49 23.08
Os04t0498800-01 Rice cytosol 28.9 21.45
Os03t0151800-02 Rice cytosol, extracellular, nucleus, plasma membrane, plastid 29.6 15.7
Os06t0109400-01 Rice cytosol 25.17 14.03
Os08t0413000-00 Rice mitochondrion 28.9 13.72
Os08t0556550-01 Rice cytosol 3.26 13.08
Os04t0617600-01 Rice cytosol 25.17 11.49
Os06t0600301-00 Rice plasma membrane 0.93 1.77
Os11t0220400-01 Rice mitochondrion 1.4 1.28
Os08t0556400-01 Rice endoplasmic reticulum, golgi, plasma membrane 0.23 0.14
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.5Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300EntrezGene:4340276
InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreProteinID:BAD72286.1ProteinID:BAF18858.1ProteinID:BAS96397.1
ncoils:CoilGO:GO:0000166GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0008540GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0017025GO:GO:0019538GO:GO:0030163GO:GO:0030433GO:GO:0031595GO:GO:0031597
GO:GO:0036402GO:GO:0045899GO:GO:1901800EnsemblPlantsGene:Os06g0173100EnsemblPlants:Os06t0173100-01InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674InterPro:PSMC3PANTHER:PTHR23073PANTHER:PTHR23073:SF7UniProt:Q5SNC0
SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI000046D474RefSeq:XP_015641102.1SEG:seg
Description
19S REGULATORY PARTICLE ATPASE SUBUNIT 5BSimilar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1). (Os06t0173100-01)
Coordinates
chr6:+:3689676..3694342
Molecular Weight (calculated)
47782.2 Da
IEP (calculated)
4.680
GRAVY (calculated)
-0.412
Length
429 amino acids
Sequence
(BLAST)
001: MTSSGAPPPA AMAVDDAEDD QLASMSTEDI VRASRLLDNE IRVLKDELQR TNLELESFKE KIKENQEKIK LNKQLPYLVG NIVEILEMNP EDEAEEDGAN
101: IDLDSQRKGK CVVLKTSTRQ TIFLPVVGLV DPDKLKPGDL VGVNKDSYLI LDTLPSEYDS RVKAMEVDEK PTEDYNDIGG LEKQIQELVE AIVLPMTHKD
201: RFQKLGIRPP KGVLLYGPPG TGKTLMARAC AAQTNATFLK LAGPQLVQMF IGDGAKLVRD AFQLAKEKAP CIIFIDEIDA IGTKRFDSEV SGDREVQRTM
301: LELLNQLDGF SSDERIKVIA ATNRADILDP ALMRSGRLDR KIEFPHPSEE ARARILQIHS RKMNVNPDVN FEELARSTDD FNGAQLKAVC VEAGMLALRR
401: DATEVTHEDF NEGIIQVQAK KKSSLNYYA
Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.