Factsheet for AT3G05530.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40714	Canola	cytosol	99.76	99.76
CDY27761	Canola	cytosol	99.76	99.76
CDY05176	Canola	cytosol	99.76	99.76
CDX74142	Canola	cytosol	99.76	99.76
Bra039431.1-P	Field mustard	cytosol	99.76	99.76
Bra001152.1-P	Field mustard	cytosol	99.76	99.76
CDY18801	Canola	cytosol	99.53	99.53
CDY18782	Canola	cytosol	99.53	99.53
Bra040214.1-P	Field mustard	cytosol	99.53	99.53
Solyc01g099760.2.1	Tomato	nucleus, plastid	94.58	94.8
PGSC0003DMT400063574	Potato	cytosol	94.58	94.8
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	85.85	94.79
GSMUA_Achr9P13230_001	Banana	cytosol	90.33	94.57
AT1G09100.1	Thale cress	cytosol	94.1	94.33
GSMUA_Achr5P04520_001	Banana	cytosol	89.39	93.58
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	93.16	92.07
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	93.16	91.86
EER87942	Sorghum	cytosol	92.92	91.63
Os02t0803700-01	Rice	cytosol, nucleus, plastid	92.69	91.61
Zm00001d045163_P001	Maize	mitochondrion	37.97	91.48
KXG31298	Sorghum	cytosol	92.22	91.36
TraesCS3B01G457100.1	Wheat	cytosol, golgi	92.22	90.09
TraesCS3A01G421900.1	Wheat	cytosol	92.22	90.09
TraesCS3D01G417000.1	Wheat	cytosol	91.98	89.86
TraesCS7B01G036400.1	Wheat	cytosol	89.15	88.52
TraesCS7D01G134800.1	Wheat	cytosol	88.44	87.41
Zm00001d018409_P007	Maize	cytosol	90.33	85.49
AT5G20000.1	Thale cress	cytosol	40.33	40.81
AT5G19990.1	Thale cress	cytosol	40.33	40.81
AT2G20140.1	Thale cress	cytosol	41.98	40.18
AT4G29040.1	Thale cress	cytosol	41.98	40.18
AT1G45000.1	Thale cress	cytosol	36.56	38.85
AT5G43010.1	Thale cress	cytosol	36.56	38.85
AT1G53750.1	Thale cress	cytosol	38.92	38.73
AT5G58290.1	Thale cress	cytosol	37.26	38.73
AT1G53780.2	Thale cress	cytosol	38.21	26.13
AT2G03670.1	Thale cress	cytosol	27.36	19.24
AT3G53230.1	Thale cress	cytosol	29.95	15.58
AT3G09840.1	Thale cress	cytosol	29.25	15.33
AT5G03340.1	Thale cress	cytosol	29.01	15.19
AT3G01610.2	Thale cress	nucleus	25.0	12.77
AT1G03000.1	Thale cress	mitochondrion	27.12	12.22
AT3G56690.1	Thale cress	cytosol, plastid	27.59	11.45
AT5G08470.1	Thale cress	cytosol	23.35	8.76

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	EntrezGene:819718
InterPro:AAA+_ATPase	ProteinID:AAF64530.1	ProteinID:AEE74254.1	EMBL:AF081573	EMBL:AF123394	ArrayExpress:AT3G05530
EnsemblPlantsGene:AT3G05530	RefSeq:AT3G05530	TAIR:AT3G05530	RefSeq:AT3G05530-TAIR-G	EnsemblPlants:AT3G05530.1	TAIR:AT3G05530.1
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EMBL:AY062705	Unigene:At.11513	EMBL:BT000140	ncoils:Coil
GO:GO:0000166	GO:GO:0000502	GO:GO:0003674	GO:GO:0003779	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0006139	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008290	GO:GO:0009056	GO:GO:0009058	GO:GO:0009553
GO:GO:0009555	GO:GO:0009987	GO:GO:0010498	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025
GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402
GO:GO:0045899	GO:GO:0051016	GO:GO:0051693	GO:GO:1901800	RefSeq:NP_187204.1	InterPro:P-loop_NTPase
PFAM:PF00004	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000229	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	UniProt:Q9SEI2	Symbol:RPT5A
SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00000A6DDD	SEG:seg	:

Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]

Coordinates

chr3:+:1603359..1606243

Molecular Weight (calculated)

47482.8 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.442

Length

424 amino acids

Sequence
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.