Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_05s0020g01180.t01 | Wine grape | cytosol | 94.33 | 94.33 |
AT3G05530.1 | Thale cress | cytosol | 94.33 | 94.1 |
KRH68501 | Soybean | nucleus | 90.07 | 89.65 |
KRG96790 | Soybean | mitochondrion | 65.48 | 83.43 |
AT2G20140.1 | Thale cress | cytosol | 43.03 | 41.08 |
AT4G29040.1 | Thale cress | cytosol | 43.03 | 41.08 |
AT5G20000.1 | Thale cress | cytosol | 39.95 | 40.33 |
AT5G19990.1 | Thale cress | cytosol | 39.95 | 40.33 |
AT1G45000.1 | Thale cress | cytosol | 37.59 | 39.85 |
AT5G43010.1 | Thale cress | cytosol | 36.88 | 39.1 |
AT5G58290.1 | Thale cress | cytosol | 37.59 | 38.97 |
AT1G53750.1 | Thale cress | cytosol | 38.77 | 38.5 |
AT1G53780.2 | Thale cress | cytosol | 38.06 | 25.97 |
AT2G03670.1 | Thale cress | cytosol | 27.66 | 19.4 |
AT3G53230.1 | Thale cress | cytosol | 29.79 | 15.46 |
AT3G09840.1 | Thale cress | cytosol | 29.08 | 15.2 |
AT5G03340.1 | Thale cress | cytosol | 28.84 | 15.06 |
AT3G01610.2 | Thale cress | nucleus | 24.11 | 12.29 |
AT1G03000.1 | Thale cress | mitochondrion | 26.71 | 12.01 |
AT3G56690.1 | Thale cress | cytosol, plastid | 27.9 | 11.55 |
AT5G08470.1 | Thale cress | cytosol | 22.93 | 8.58 |
Protein Annotations
Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.5 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | EntrezGene:837431 |
UniProt:A0A178WHJ4 | InterPro:AAA+_ATPase | ProteinID:AAB70397.1 | ProteinID:ACJ66733.1 | ProteinID:AEE28396.1 | EMBL:AF412095 |
ArrayExpress:AT1G09100 | EnsemblPlantsGene:AT1G09100 | RefSeq:AT1G09100 | TAIR:AT1G09100 | RefSeq:AT1G09100-TAIR-G | EnsemblPlants:AT1G09100.1 |
TAIR:AT1G09100.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY050423 | EMBL:AY124813 | Unigene:At.10379 |
ncoils:Coil | GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0006950 |
GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 |
GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009987 | GO:GO:0010255 |
GO:GO:0010498 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017025 | GO:GO:0019538 |
GO:GO:0019725 | GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 | GO:GO:0032991 |
GO:GO:0036402 | GO:GO:0043234 | GO:GO:0045899 | GO:GO:1901800 | RefSeq:NP_172384.1 | UniProt:O04019 |
ProteinID:OAP17849.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
PO:PO:0000229 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020094 | PO:PO:0020100 | PO:PO:0020137 |
PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00674 | InterPro:PSMC3 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF7 |
Symbol:RPT5B | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI00000A6938 | SEG:seg |
Description
RPT5B26S proteasome regulatory subunit 6A homolog B [Source:UniProtKB/Swiss-Prot;Acc:O04019]
Coordinates
chr1:-:2936528..2939363
Molecular Weight (calculated)
47040.3 Da
IEP (calculated)
4.634
GRAVY (calculated)
-0.385
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAMAEDTS FEGDQLASMT TDDIGRASRL LANEIRILKE ESQRTNLDLE SVKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMSPEDDAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.