Skip to main content
crop-pal logo
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_05s0020g01180.t01 Wine grape cytosol 94.33 94.33
AT3G05530.1 Thale cress cytosol 94.33 94.1
KRH68501 Soybean nucleus 90.07 89.65
KRG96790 Soybean mitochondrion 65.48 83.43
AT2G20140.1 Thale cress cytosol 43.03 41.08
AT4G29040.1 Thale cress cytosol 43.03 41.08
AT5G20000.1 Thale cress cytosol 39.95 40.33
AT5G19990.1 Thale cress cytosol 39.95 40.33
AT1G45000.1 Thale cress cytosol 37.59 39.85
AT5G43010.1 Thale cress cytosol 36.88 39.1
AT5G58290.1 Thale cress cytosol 37.59 38.97
AT1G53750.1 Thale cress cytosol 38.77 38.5
AT1G53780.2 Thale cress cytosol 38.06 25.97
AT2G03670.1 Thale cress cytosol 27.66 19.4
AT3G53230.1 Thale cress cytosol 29.79 15.46
AT3G09840.1 Thale cress cytosol 29.08 15.2
AT5G03340.1 Thale cress cytosol 28.84 15.06
AT3G01610.2 Thale cress nucleus 24.11 12.29
AT1G03000.1 Thale cress mitochondrion 26.71 12.01
AT3G56690.1 Thale cress cytosol, plastid 27.9 11.55
AT5G08470.1 Thale cress cytosol 22.93 8.58
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.5Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300EntrezGene:837431
UniProt:A0A178WHJ4InterPro:AAA+_ATPaseProteinID:AAB70397.1ProteinID:ACJ66733.1ProteinID:AEE28396.1EMBL:AF412095
ArrayExpress:AT1G09100EnsemblPlantsGene:AT1G09100RefSeq:AT1G09100TAIR:AT1G09100RefSeq:AT1G09100-TAIR-GEnsemblPlants:AT1G09100.1
TAIR:AT1G09100.1InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreEMBL:AY050423EMBL:AY124813Unigene:At.10379
ncoils:CoilGO:GO:0000166GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0005886GO:GO:0006139GO:GO:0006357GO:GO:0006950
GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008540
GO:GO:0009056GO:GO:0009058GO:GO:0009553GO:GO:0009555GO:GO:0009987GO:GO:0010255
GO:GO:0010498GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0017025GO:GO:0019538
GO:GO:0019725GO:GO:0030163GO:GO:0030433GO:GO:0031595GO:GO:0031597GO:GO:0032991
GO:GO:0036402GO:GO:0043234GO:GO:0045899GO:GO:1901800RefSeq:NP_172384.1UniProt:O04019
ProteinID:OAP17849.1InterPro:P-loop_NTPasePFAM:PF00004PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000229PO:PO:0000230PO:PO:0000293PO:PO:0001017PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001170PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020094PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281ScanProsite:PS00674InterPro:PSMC3PANTHER:PTHR23073PANTHER:PTHR23073:SF7
Symbol:RPT5BSMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI00000A6938SEG:seg
Description
RPT5B26S proteasome regulatory subunit 6A homolog B [Source:UniProtKB/Swiss-Prot;Acc:O04019]
Coordinates
chr1:-:2936528..2939363
Molecular Weight (calculated)
47040.3 Da
IEP (calculated)
4.634
GRAVY (calculated)
-0.385
Length
423 amino acids
Sequence
(BLAST)
001: MATAMAEDTS FEGDQLASMT TDDIGRASRL LANEIRILKE ESQRTNLDLE SVKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMSPEDDAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.