Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11249 | Canola | cytosol | 94.94 | 96.37 |
| AT3G09840.1 | Thale cress | cytosol | 96.17 | 96.29 |
| CDX80862 | Canola | cytosol, plastid | 94.81 | 94.93 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 92.84 | 93.3 |
| PGSC0003DMT400031321 | Potato | cytosol | 92.47 | 93.04 |
| Solyc06g074980.2.1 | Tomato | nucleus | 92.47 | 93.04 |
| PGSC0003DMT400027096 | Potato | cytosol | 92.59 | 92.82 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 92.47 | 92.7 |
| PGSC0003DMT400055513 | Potato | cytosol | 92.22 | 92.57 |
| AT3G53230.1 | Thale cress | cytosol | 92.72 | 92.15 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 91.48 | 92.05 |
| PGSC0003DMT400050662 | Potato | cytosol | 91.36 | 91.93 |
| Zm00001d048409_P001 | Maize | cytosol | 91.23 | 91.92 |
| GSMUA_Achr5P15500_001 | Banana | cytosol, plasma membrane | 91.6 | 91.72 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 91.36 | 91.7 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 91.6 | 91.49 |
| Zm00001d032859_P006 | Maize | plasma membrane | 91.48 | 91.48 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 90.99 | 91.1 |
| GSMUA_Achr4P26800_001 | Banana | cytosol | 90.99 | 91.1 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 90.74 | 90.97 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 21.11 | 87.69 |
| GSMUA_Achr9P23550_001 | Banana | mitochondrion | 87.04 | 87.47 |
| TraesCSU01G001000.1 | Wheat | cytosol | 86.67 | 87.42 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 80.12 | 84.84 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 81.98 | 84.26 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 81.6 | 83.78 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 81.48 | 83.76 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 81.23 | 83.5 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 54.81 | 83.3 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 81.11 | 83.27 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 74.69 | 83.22 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 80.99 | 83.14 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 80.99 | 83.04 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 80.37 | 83.04 |
| KXG40206 | Sorghum | cytosol | 79.75 | 82.61 |
| EER95525 | Sorghum | cytosol | 79.51 | 82.56 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 70.86 | 82.47 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 81.48 | 81.68 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 81.48 | 81.08 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 72.47 | 80.52 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 57.28 | 79.86 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 58.64 | 79.56 |
| Bra005733.1-P | Field mustard | cytosol | 96.05 | 70.47 |
| Zm00001d032117_P001 | Maize | cytosol | 27.16 | 68.75 |
| AT2G03670.1 | Thale cress | cytosol | 26.79 | 35.99 |
| AT1G45000.1 | Thale cress | cytosol | 17.04 | 34.59 |
| AT5G43010.1 | Thale cress | cytosol | 16.79 | 34.09 |
| AT1G53750.1 | Thale cress | cytosol | 17.16 | 32.63 |
| AT3G01610.2 | Thale cress | nucleus | 31.6 | 30.84 |
| AT5G58290.1 | Thale cress | cytosol | 15.06 | 29.9 |
| AT2G20140.1 | Thale cress | cytosol | 15.93 | 29.12 |
| AT5G20000.1 | Thale cress | cytosol | 15.06 | 29.12 |
| AT3G05530.1 | Thale cress | cytosol | 15.19 | 29.01 |
| AT5G19990.1 | Thale cress | cytosol | 14.94 | 28.88 |
| AT1G09100.1 | Thale cress | cytosol | 15.06 | 28.84 |
| AT4G29040.1 | Thale cress | cytosol | 15.68 | 28.67 |
| AT3G56690.1 | Thale cress | cytosol, plastid | 32.59 | 25.83 |
| AT1G03000.1 | Thale cress | mitochondrion | 27.9 | 24.02 |
| AT1G53780.2 | Thale cress | cytosol | 16.79 | 21.94 |
| AT5G08470.1 | Thale cress | cytosol | 25.43 | 18.23 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | EntrezGene:831870 |
| InterPro:AAA+_ATPase | InterPro:AAA_ATPase_CDC48 | ProteinID:AED90587.1 | EMBL:AK117125 | EMBL:AK118571 | ArrayExpress:AT5G03340 |
| EnsemblPlantsGene:AT5G03340 | RefSeq:AT5G03340 | TAIR:AT5G03340 | RefSeq:AT5G03340-TAIR-G | EnsemblPlants:AT5G03340.1 | TAIR:AT5G03340.1 |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | Unigene:At.33291 | EMBL:BT006485 | ProteinID:CAB83290.1 |
| InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom | InterPro:Cdc48_dom2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005856 |
| GO:GO:0006810 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009524 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016787 | GO:GO:0030312 | GO:GO:0051301 | RefSeq:NP_568114.1 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PFAM:PF02359 | PFAM:PF02933 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 |
| UniProt:Q9LZF6 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 | SUPFAM:SSF52540 |
| SUPFAM:SSF54585 | TIGRFAMs:TIGR01243 | UniParc:UPI0000126C22 | SEG:seg | : | : |
Description
CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
Coordinates
chr5:-:809830..813293
Molecular Weight (calculated)
89963.0 Da
IEP (calculated)
4.827
GRAVY (calculated)
-0.384
Length
810 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.