Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G144500.1 | Wheat | cytosol | 67.67 | 88.37 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 94.11 | 83.02 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 86.78 | 82.85 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 93.1 | 82.23 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 93.1 | 80.2 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 68.39 | 79.73 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 93.1 | 79.61 |
| EER95525 | Sorghum | cytosol | 84.2 | 75.13 |
| KXG40206 | Sorghum | cytosol | 84.2 | 74.94 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 83.48 | 72.08 |
| TraesCS4A01G035700.1 | Wheat | plastid | 83.91 | 71.83 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 83.33 | 71.78 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 83.33 | 71.78 |
| CDX78154 | Canola | cytosol | 76.72 | 71.77 |
| TraesCS4A01G035500.1 | Wheat | golgi, nucleus | 84.2 | 71.64 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 83.33 | 71.52 |
| KRG99061 | Soybean | cytosol | 20.55 | 71.5 |
| KRG94277 | Soybean | cytosol | 21.26 | 71.5 |
| Bra003123.1-P | Field mustard | cytosol | 83.19 | 71.48 |
| CDY11249 | Canola | cytosol | 81.9 | 71.43 |
| CDY13308 | Canola | cytosol | 83.05 | 71.36 |
| PGSC0003DMT400050662 | Potato | cytosol | 82.47 | 71.3 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 83.19 | 71.22 |
| CDY07941 | Canola | cytosol | 82.76 | 71.2 |
| CDX73996 | Canola | cytosol | 82.76 | 71.2 |
| Bra001297.1-P | Field mustard | cytosol | 82.76 | 71.2 |
| AT3G09840.1 | Thale cress | cytosol | 82.76 | 71.2 |
| CDX73571 | Canola | cytosol | 76.01 | 71.2 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 82.33 | 71.18 |
| AT3G53230.1 | Thale cress | cytosol | 83.33 | 71.17 |
| TraesCS1A01G222100.1 | Wheat | cytosol | 81.75 | 71.12 |
| Bra034089.1-P | Field mustard | cytosol | 82.76 | 71.11 |
| CDY41316 | Canola | cytosol, extracellular | 82.76 | 71.11 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 82.47 | 71.04 |
| PGSC0003DMT400027096 | Potato | cytosol | 82.47 | 71.04 |
| CDY22207 | Canola | cytosol | 82.61 | 70.99 |
| Solyc06g074980.2.1 | Tomato | nucleus | 82.04 | 70.93 |
| PGSC0003DMT400031321 | Potato | cytosol | 82.04 | 70.93 |
| CDY54618 | Canola | cytosol | 82.33 | 70.92 |
| PGSC0003DMT400055513 | Potato | cytosol | 82.18 | 70.88 |
| AT5G03340.1 | Thale cress | cytosol | 82.47 | 70.86 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 82.04 | 70.76 |
| Bra029795.1-P | Field mustard | cytosol | 82.18 | 70.7 |
| CDY41581 | Canola | cytosol | 82.04 | 70.67 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 81.9 | 70.63 |
| CDX80862 | Canola | cytosol, plastid | 82.04 | 70.58 |
| Bra006978.1-P | Field mustard | cytosol | 81.75 | 70.16 |
| TraesCS1A01G190300.1 | Wheat | cytosol | 81.18 | 69.93 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 81.03 | 69.8 |
| KRH30601 | Soybean | cytosol | 80.32 | 69.35 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 75.72 | 68.89 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 68.97 | 66.3 |
| CDX67563 | Canola | cytosol | 81.47 | 64.51 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 17.53 | 62.24 |
| KRH45638 | Soybean | cytosol | 26.15 | 56.7 |
| TraesCS2A01G060000.1 | Wheat | cytosol | 65.23 | 52.55 |
| Bra005733.1-P | Field mustard | cytosol | 82.04 | 51.72 |
| TraesCS2A01G355200.1 | Wheat | cytosol | 28.59 | 35.1 |
| TraesCS3A01G450800.1 | Wheat | mitochondrion | 30.6 | 28.55 |
| TraesCS4A01G463300.1 | Wheat | mitochondrion | 31.9 | 28.28 |
| TraesCS7A01G025800.1 | Wheat | mitochondrion | 31.75 | 28.15 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 17.1 | 27.93 |
| TraesCS7A01G378600.1 | Wheat | cytosol | 15.8 | 27.5 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 15.66 | 27.25 |
| TraesCS7A01G545700.1 | Wheat | cytosol | 15.09 | 26.38 |
| TraesCS2A01G086400.1 | Wheat | cytosol | 15.66 | 26.27 |
| TraesCS2A01G475900.1 | Wheat | cytosol | 15.8 | 25.76 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 15.37 | 24.65 |
| TraesCS6A01G177600.1 | Wheat | cytosol | 14.22 | 23.68 |
| TraesCS2A01G471400.1 | Wheat | cytosol | 15.37 | 23.46 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 14.22 | 23.4 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 14.8 | 22.89 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 14.66 | 22.72 |
| TraesCS4A01G204700.1 | Wheat | cytosol, plastid | 30.75 | 21.27 |
| TraesCS1A01G071300.1 | Wheat | cytosol, plastid | 30.46 | 21.09 |
| TraesCS2A01G457600.3 | Wheat | mitochondrion | 26.01 | 19.4 |
| TraesCS7A01G277100.1 | Wheat | peroxisome | 22.7 | 14.5 |
| TraesCS5A01G301500.1 | Wheat | mitochondrion | 21.55 | 13.94 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:Cdc48_dom2 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02933 | PFAM:PF09336 |
| ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 | SMART:SM01072 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | EnsemblPlantsGene:TraesCS3A01G145000 | EnsemblPlants:TraesCS3A01G145000.1 | InterPro:Vps4_C | TIGR:cd00009 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:127820054..127834670
Molecular Weight (calculated)
77298.3 Da
IEP (calculated)
4.782
GRAVY (calculated)
-0.350
Length
696 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAASKKA ANRLVVEEAA TNDNSVCNLH PATMEKLSIF QGDIVLLKGK RRHNTFGRRV HILPLDDTVE GIEGNLFDAY LKPYFIDAYR PVHKGDLFLV
101: RGGMRSVEFK VMEIDPTVDY CVVVPDMEIF CEGEPVKRED EERLDDIGYD DVGGMGKPLT LIRELVELPL RHPQIFKSIG VKPPKGILLY GPPGSGKTLI
201: ARAVANETGA FFFLINGPEI MSKMAGESES NLREAFEEAE KNAPSIIFID EIDSIAPNRE KTHGEVERRI VSQLLTLVDG MKARTHVIVM GATNRPNSID
301: PALRRFGRFD REIDIGVPDE VGRLEVLRIH TKNMKLDEDV NLECIREKMD VIDLEDDTID AEILNSMAVT NDHLKTTLVG TNPSALRETV VEVPNVNWND
401: IGGLDGVKRE LQETVQYPVE HPEKFKKFGM LPSKGVLFYG PPGCGKTLLA KAIANECQAN FISIKGPELL TMWFGESEAN VREIFDKARQ SAPCVVFFDE
501: LDSIASQRGS RVGDAGGAAD RVLNQLLTEM DGMNAKKTLI YIPLPDEASR HQIFKACLRK SPVAKDVDLG ALAKFTAGFS GADITEICQR TCKYAIREDI
601: EKDMERQRMG KDTMEVDGGQ EEEAAEIKAA HFEDSMKYAR RSVSDADIRK YQAFAQTLQQ SRGFGTEFRF PAQPQAAEAA ADNSAAADEE EDDLYK
101: RGGMRSVEFK VMEIDPTVDY CVVVPDMEIF CEGEPVKRED EERLDDIGYD DVGGMGKPLT LIRELVELPL RHPQIFKSIG VKPPKGILLY GPPGSGKTLI
201: ARAVANETGA FFFLINGPEI MSKMAGESES NLREAFEEAE KNAPSIIFID EIDSIAPNRE KTHGEVERRI VSQLLTLVDG MKARTHVIVM GATNRPNSID
301: PALRRFGRFD REIDIGVPDE VGRLEVLRIH TKNMKLDEDV NLECIREKMD VIDLEDDTID AEILNSMAVT NDHLKTTLVG TNPSALRETV VEVPNVNWND
401: IGGLDGVKRE LQETVQYPVE HPEKFKKFGM LPSKGVLFYG PPGCGKTLLA KAIANECQAN FISIKGPELL TMWFGESEAN VREIFDKARQ SAPCVVFFDE
501: LDSIASQRGS RVGDAGGAAD RVLNQLLTEM DGMNAKKTLI YIPLPDEASR HQIFKACLRK SPVAKDVDLG ALAKFTAGFS GADITEICQR TCKYAIREDI
601: EKDMERQRMG KDTMEVDGGQ EEEAAEIKAA HFEDSMKYAR RSVSDADIRK YQAFAQTLQQ SRGFGTEFRF PAQPQAAEAA ADNSAAADEE EDDLYK
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.