Factsheet for TraesCS2A01G060000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G011690.1	Barley	cytosol	86.81	91.02
HORVU5Hr1G069560.1	Barley	cytosol	22.11	90.09
HORVU6Hr1G053620.1	Barley	cytosol	37.27	89.69
EES14976	Sorghum	cytosol	72.34	78.91
Zm00001d050303_P001	Maize	cytosol	71.64	78.35
Os08t0413000-00	Rice	mitochondrion	72.34	69.14
TraesCS1A01G222100.1	Wheat	cytosol	62.96	68.0
TraesCS4A01G035700.1	Wheat	plastid	62.62	66.54
TraesCS1A01G190300.1	Wheat	cytosol	62.15	66.46
TraesCS4A01G035500.1	Wheat	golgi, nucleus	62.85	66.38
TraesCS3A01G144500.1	Wheat	cytosol	40.74	66.04
TraesCS3A01G145000.1	Wheat	cytosol	52.55	65.23
TraesCS1A01G248500.1	Wheat	cytosol	45.02	65.16
TraesCS3A01G145100.1	Wheat	cytosol	59.26	64.89
TraesCS2A01G355200.1	Wheat	cytosol	26.97	41.09
TraesCS3A01G450800.1	Wheat	mitochondrion	29.28	33.91
TraesCS2A01G086400.1	Wheat	cytosol	15.62	32.53
TraesCS7A01G545700.1	Wheat	cytosol	14.93	32.41
TraesCS7A01G156800.1	Wheat	cytosol	15.97	32.39
TraesCS7A01G025800.1	Wheat	mitochondrion	28.94	31.85
TraesCS6A01G162700.2	Wheat	cytosol, golgi	14.7	31.75
TraesCS4A01G463300.1	Wheat	mitochondrion	28.82	31.72
TraesCS7A01G378600.1	Wheat	cytosol	14.58	31.5
TraesCS2A01G475900.1	Wheat	cytosol	15.51	31.38
TraesCS6A01G177600.1	Wheat	cytosol	14.58	30.14
TraesCS2A01G471400.1	Wheat	cytosol	15.51	29.39
TraesCS3A01G421900.1	Wheat	cytosol	14.7	29.26
TraesCS7A01G372600.1	Wheat	cytosol	14.24	29.08
TraesCS2A01G090000.1	Wheat	cytosol	14.47	27.84
TraesCS4A01G115000.1	Wheat	cytosol	14.35	27.56
TraesCS4A01G204700.1	Wheat	cytosol, plastid	32.06	27.53
TraesCS1A01G071300.1	Wheat	cytosol, plastid	31.94	27.46
TraesCS2A01G457600.3	Wheat	mitochondrion	24.88	23.04
TraesCS7A01G277100.1	Wheat	peroxisome	22.11	17.52
TraesCS5A01G301500.1	Wheat	mitochondrion	21.41	17.19

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF73	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS2A01G060000	EnsemblPlants:TraesCS2A01G060000.1	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:26865185..26867898

Molecular Weight (calculated)

94584.3 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.233

Length

864 amino acids

Sequence
(BLAST)

001: MQAELRSVDS VAATYVGSRS LYIYPHRDAV KPPSRAPAAS HRLDPADSLD LRSDRPRKLD RSIAAVATHA RSAMEPKKDY STAILERKKA PNRLVVDDAE
101: GGVAVDSSTV ALSPGTMDAL DLFNGDVVAL RGKRRRETVC YAAKDASCPD GLARVNRVVR GNLRLRLGDL VTVVPCPGVK DAARVAISPF EDSVDGISGN
201: LFDAYVKPYF IGAWRPVRKG DRFVVHGHMH AVEFKVVDTD PDECVIVAAG TQVFCDDASP VKREDEERLD GPGYDDVGGV RKQLAQIREL VELPLRHPKL
301: FKTLGVKPPK GILLYGPPGT GKTLLARAIA AESGANFVVV NGPEIMSMMA GQSEDNLREV FAEAEAQAPS IIFMDEIDAI APNREKTHGE VERRVVSQLL
401: TLMDGLRPRA QVMVIGATNR PNSLDPALRR FGRFDKEIDI GVPDEVGRLE ILRIHSKDMP LSDDVDLERI GKDTHGFVGA DLAALCSEAA FQCIRQKMDV
501: IDLEADTIDV EVLNSMSVIM DDLVHAKEVT KPSALRETGL VEVPKVSWED VGGLEDVKRE LQETVQYPVE HPEMFEFFGM EPSRGVLFYG PPGCGKTLLA
601: KAIARECKAN FISVKGPELL TMWFGESESN VRDLFDKARQ SAPCVLFFDE LDSIAVKRGN SVGDAGGTSD RVLNQLLTEM DGINAKKTVF VIGATNRPDI
701: IDPALLRPGR LDQLIYIPLP DEASRLQIFK SCLRRSPLSR RVNLPDLARS TAGFSGADIT EICQRACKLA VRDVIQRSSL VGKAAAMAGA EITRKHFLGA
801: MEHARRSVSD LDVLKYEYFA RKFKQGGSFE EEAPQPQVAG PPQGHLELKA AEDVDASMDE DSLY

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.