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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi
Any Predictor:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G421900.1
TraesCS3B01G457100.1
TraesCS3D01G417000.1
TraesCS7B01G036400.1
TraesCS7D01G134800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43010.1 TraesCS3A01G421900.1 AT3G05530.1 21798944
AT5G43010.1 TraesCS3B01G457100.1 AT3G05530.1 21798944
AT5G43010.1 TraesCS3D01G417000.1 AT3G05530.1 21798944
AT5G43010.1 TraesCS7B01G036400.1 AT3G05530.1 21798944
AT5G43010.1 TraesCS7D01G134800.1 AT3G05530.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G149500.1 Wheat cytosol 89.25 99.17
TraesCS6B01G188500.1 Wheat cytosol 99.0 99.0
Zm00001d053649_P002 Maize cytosol, mitochondrion 97.25 97.25
EES06471 Sorghum cytosol 97.25 97.25
Zm00001d015788_P001 Maize plasma membrane 96.75 96.75
Os02t0199900-01 Rice nucleus, plasma membrane 96.25 96.25
TraesCS7A01G378600.1 Wheat cytosol 94.0 94.0
HORVU6Hr1G032570.5 Barley cytosol 95.25 93.15
VIT_18s0001g13090.t01 Wine grape cytosol 92.5 92.96
KRH51796 Soybean cytosol 92.25 92.71
KRH61120 Soybean endoplasmic reticulum 92.25 92.71
VIT_03s0038g04350.t01 Wine grape cytosol 92.25 92.48
KRH05868 Soybean cytosol, nucleus 92.0 92.23
KRH15139 Soybean cytosol, endoplasmic reticulum, nucleus 91.75 91.98
Solyc01g109940.2.1 Tomato nucleus 91.5 91.96
GSMUA_AchrUn_... Banana cytosol 92.0 91.77
PGSC0003DMT400079514 Potato cytosol 91.25 91.71
GSMUA_Achr4P03720_001 Banana cytosol 91.0 91.46
AT1G45000.1 Thale cress cytosol 90.5 90.73
CDX71534 Canola cytosol 90.0 90.23
Bra033655.1-P Field mustard cytosol 90.0 90.23
GSMUA_Achr7P17620_001 Banana cytosol 92.25 90.0
AT5G43010.1 Thale cress cytosol 89.75 89.97
CDY22373 Canola cytosol 89.75 89.97
Bra035338.1-P Field mustard cytosol 89.75 89.97
CDY02428 Canola cytosol, extracellular 89.75 89.97
CDY25226 Canola cytosol 89.5 89.72
Solyc10g054040.1.1 Tomato cytosol, unclear 83.5 83.71
TraesCS7A01G545700.1 Wheat cytosol 76.25 76.63
CDY20370 Canola cytosol 45.0 66.91
KRH51488 Soybean mitochondrion 67.5 63.83
CDY39032 Canola cytosol 38.5 61.35
KRH00031 Soybean plastid 51.25 59.42
CDY39033 Canola cytosol 59.5 58.62
CDY20371 Canola cytosol, plastid 59.0 53.64
TraesCS6A01G177600.1 Wheat cytosol 43.25 41.39
TraesCS7A01G372600.1 Wheat cytosol 43.0 40.66
TraesCS7A01G156800.1 Wheat cytosol 41.25 38.73
TraesCS2A01G086400.1 Wheat cytosol 39.5 38.07
Bra008198.1-P Field mustard cytosol 59.5 37.9
TraesCS4A01G115000.1 Wheat cytosol 41.5 36.89
TraesCS2A01G475900.1 Wheat cytosol 39.25 36.77
TraesCS2A01G090000.1 Wheat cytosol 41.0 36.53
TraesCS3A01G421900.1 Wheat cytosol 39.25 36.18
TraesCS2A01G471400.1 Wheat cytosol 36.5 32.02
TraesCS2A01G355200.1 Wheat cytosol 29.5 20.81
TraesCS3A01G144500.1 Wheat cytosol 23.5 17.64
TraesCS1A01G222100.1 Wheat cytosol 34.0 17.0
TraesCS3A01G450800.1 Wheat mitochondrion 31.5 16.89
TraesCS3A01G145100.1 Wheat cytosol 33.0 16.73
TraesCS4A01G035700.1 Wheat plastid 34.0 16.73
TraesCS4A01G035500.1 Wheat golgi, nucleus 33.75 16.5
TraesCS1A01G190300.1 Wheat cytosol 33.25 16.46
TraesCS3A01G145000.1 Wheat cytosol 27.25 15.66
TraesCS4A01G463300.1 Wheat mitochondrion 30.0 15.29
TraesCS7A01G025800.1 Wheat mitochondrion 30.0 15.29
TraesCS2A01G060000.1 Wheat cytosol 31.75 14.7
TraesCS1A01G248500.1 Wheat cytosol 21.0 14.07
TraesCS4A01G204700.1 Wheat cytosol, plastid 30.75 12.23
TraesCS1A01G071300.1 Wheat cytosol, plastid 30.25 12.04
TraesCS2A01G457600.3 Wheat mitochondrion 26.75 11.47
TraesCS7A01G277100.1 Wheat peroxisome 27.25 10.0
TraesCS5A01G301500.1 Wheat mitochondrion 24.5 9.11
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.4Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_corencoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0030163GO:GO:0036402InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674InterPro:PSMC6
PANTHER:PTHR23073PANTHER:PTHR23073:SF59SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242EnsemblPlantsGene:TraesCS6A01G162700
EnsemblPlants:TraesCS6A01G162700.2TIGR:cd00009SEG:seg:::
Description
No Description!
Coordinates
chr6A:-:158046636..158050807
Molecular Weight (calculated)
44548.9 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.324
Length
400 amino acids
Sequence
(BLAST)
001: MADGEDAAAA RRRTAISDYR KKMLTCRELE SRVGTVRENL KIARKDFAKT EDDLKSLQSV GQIIGEVLRP LDNERFIVKA SSGPRYVVGC RSKVDKEKLT
101: SGTRVVLDMT TLTIMRTLPR EVDPVVYNML HEDPGNVSYS AVGGLSDQIR ELRESIELPL MNPELFLRVG IKPPKGVLLY GPPGTGKTLL ARAIASNIDA
201: NFLKIVSSAI IDKYIGESAR LIREMFGYAR DHQPCIIFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDELGKV KMIMATNRPD VLDPALLRPG
301: RLDRKIEIPL PNEQSRTEVL KIHAAGIAKH GEIDYEAVVK LAEGFNGADL RNVCTEAGMS AIRAERDYVV HEDFMKAVRK LNDAKKLESS AHYSADFGKD
Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.