Factsheet for Bra008198.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39033	Canola	cytosol	61.78	95.57
CDY20371	Canola	cytosol, plastid	63.06	90.0
TraesCS6D01G149500.1	Wheat	cytosol	35.35	61.67
Zm00001d046539_P002	Maize	cytosol, mitochondrion	38.53	60.8
Zm00001d053649_P002	Maize	cytosol, mitochondrion	38.22	60.0
Zm00001d015788_P001	Maize	plasma membrane	38.22	60.0
EES06471	Sorghum	cytosol	38.22	60.0
GSMUA_AchrUn_...	Banana	cytosol	38.06	59.6
EER88627	Sorghum	cytosol	37.74	59.55
Os02t0199900-01	Rice	nucleus, plasma membrane	37.9	59.5
TraesCS6A01G162700.2	Wheat	cytosol, golgi	37.9	59.5
Bra035338.1-P	Field mustard	cytosol	37.74	59.4
Bra033655.1-P	Field mustard	cytosol	37.74	59.4
TraesCS6B01G188500.1	Wheat	cytosol	37.74	59.25
VIT_18s0001g13090.t01	Wine grape	cytosol	37.42	59.05
TraesCS7D01G375500.1	Wheat	cytosol	37.58	59.0
TraesCS7B01G280400.1	Wheat	cytosol, unclear	37.58	59.0
GSMUA_Achr4P03720_001	Banana	cytosol	37.26	58.79
TraesCS7A01G378600.1	Wheat	cytosol	37.42	58.75
Os06t0607800-01	Rice	nucleus	37.42	58.6
GSMUA_Achr7P17620_001	Banana	cytosol	38.06	58.29
HORVU6Hr1G032570.5	Barley	cytosol	37.42	57.46
HORVU7Hr1G090380.3	Barley	cytosol	38.53	55.5
TraesCS7D01G532000.1	Wheat	cytosol	35.03	55.28
TraesCS7A01G545700.1	Wheat	cytosol	35.03	55.28
TraesCS7B01G468900.1	Wheat	cytosol	34.71	54.77
HORVU7Hr1G119300.13	Barley	cytosol	34.55	53.98
Bra005023.1-P	Field mustard	cytosol	17.99	47.28
Bra006529.1-P	Field mustard	cytosol	26.43	39.62
Bra002279.1-P	Field mustard	cytosol	26.11	39.14
Bra011079.1-P	Field mustard	cytosol	25.32	35.89
Bra010342.1-P	Field mustard	cytosol	25.32	35.73
Bra020378.1-P	Field mustard	cytosol	22.13	34.41
Bra002662.1-P	Field mustard	cytosol	22.13	34.41
Bra006775.1-P	Field mustard	cytosol	21.02	33.76
Bra039688.1-P	Field mustard	cytosol	22.77	33.57
Bra030922.1-P	Field mustard	cytosol	22.77	33.57
Bra024165.1-P	Field mustard	cytosol	17.2	33.44
Bra040214.1-P	Field mustard	cytosol	22.29	33.02
Bra001152.1-P	Field mustard	cytosol	22.29	33.02
Bra039431.1-P	Field mustard	cytosol	22.29	33.02
Bra040569.1-P	Field mustard	cytosol	22.45	32.56
Bra020079.1-P	Field mustard	cytosol	26.59	23.16
Bra017378.1-P	Field mustard	cytosol	17.36	18.08
Bra022833.1-P	Field mustard	cytosol	18.15	15.34
Bra029795.1-P	Field mustard	cytosol	19.75	15.33
Bra001297.1-P	Field mustard	cytosol	19.75	15.33
Bra034089.1-P	Field mustard	cytosol	19.75	15.31
Bra003123.1-P	Field mustard	cytosol	19.43	15.06
Bra006978.1-P	Field mustard	cytosol	19.27	14.92
Bra000999.1-P	Field mustard	cytosol, mitochondrion	18.47	13.93
Bra007262.1-P	Field mustard	plastid	18.79	12.04
Bra005733.1-P	Field mustard	cytosol	20.22	11.5
Bra009342.1-P	Field mustard	cytosol	17.2	9.63
Bra032565.1-P	Field mustard	mitochondrion	17.99	6.06
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.16	0.45

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra008198	EnsemblPlants:Bra008198.1	EnsemblPlants:Bra008198.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800
UniProt:M4CVF1	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC6	PANTHER:PTHR23073
PANTHER:PTHR23073:SF59	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI0002545B48	SEG:seg

Description

AT1G45000 (E=4e-130) | 26S proteasome regulatory complex subunit p42D, putative

Coordinates

chrA02:+:13717530..13721456

Molecular Weight (calculated)

70523.3 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.276

Length

628 amino acids

Sequence
(BLAST)

001: MVYQHDGGDV SYSDLGGLTH QLKDVRDWIE RPLIDPDIFE RVGVKPPKVV SSSLVSKYVG ESPLMVREMF KYAREHQPCI IFLDEIDAIG RRRSSYGEGD
101: TSECDRVLIE LLSQLDGFNE LDKVKVIMAT NRPDVLDPAL LRPGRIDKKI EFSLPNEDSR MRILKIHASG ITKQGAIDYE KVVKLSEGFN GADMRNICTE
201: AGMLALRAGH DYVVPSDFIK ASMEDVDEEI ERRINDEKVK RGIAIMRCKS KLLIRNINQE RTKTVKENLE ALKIALEETE DELKYFTTTH AELVGEVVQP
301: LGKERFLVKV NEGVRYIVNR SSLVAQSKLV SGTRVSLQRR TFTIMRILPP EVNPLVQKMV YQHDGGDVSY SDLGGLTHQL KDVRDWIERP LIDPDIFERV
401: GVKPPKGVLL YGPPGTGKTL LAKAIASYIN STFLMVVSSS LVSKYVGESS LLVREMFKYA REHQPCIIFM DEIDAVGRRR SRYGEGETSE CNRVLVELLS
501: QLDGFNELDK VKVIMATNRP DVLDPALLRP GRIDKKIEFS LPNEDSRMRI LKIHASGITK QGAIDYEKVV KLSEGFSGAD VCNICTEAGM LALRAGHDYV
601: VPNDFIKAVT KLGEAKKLES SAHYSAGF

Best Arabidopsis Sequence Match ( AT5G43010.1 )
(BLAST)

001: MTDVDESVRR RTAAVSEYRK KLLQHKELES RVRTARENLR GAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDNLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMDILK IHAAGIAKHG EIDYEAIVKL AEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4A26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.