Factsheet for Bra017378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04161	Canola	cytosol	99.83	99.83
AT2G03670.1	Thale cress	cytosol	89.22	89.22
KRH70928	Soybean	cytosol	71.64	71.29
Solyc05g012190.2.1	Tomato	cytosol	68.99	68.09
PGSC0003DMT400072919	Potato	cytosol	68.66	67.76
Os05t0376200-00	Rice	cytosol	41.63	64.19
Zm00001d025776_P002	Maize	cytosol	60.2	63.91
KXG26645	Sorghum	cytosol	60.03	63.73
TraesCS2B01G373100.1	Wheat	cytosol	59.87	63.44
HORVU2Hr1G086170.2	Barley	cytosol	59.87	63.44
TraesCS2A01G355200.1	Wheat	cytosol	59.54	63.32
TraesCS2D01G353100.1	Wheat	cytosol	59.37	63.03
Os04t0498800-01	Rice	cytosol	57.55	60.03
GSMUA_Achr6P11080_001	Banana	plastid	59.04	59.43
Bra005023.1-P	Field mustard	cytosol	13.76	34.73
Bra002662.1-P	Field mustard	cytosol	18.91	28.22
Bra020378.1-P	Field mustard	cytosol	18.74	27.97
Bra006775.1-P	Field mustard	cytosol	18.08	27.88
Bra029795.1-P	Field mustard	cytosol	37.15	27.69
Bra006978.1-P	Field mustard	cytosol	37.15	27.62
Bra001297.1-P	Field mustard	cytosol	36.98	27.56
Bra034089.1-P	Field mustard	cytosol	36.98	27.53
Bra022833.1-P	Field mustard	cytosol	33.83	27.46
Bra033655.1-P	Field mustard	cytosol	18.08	27.32
Bra035338.1-P	Field mustard	cytosol	18.08	27.32
Bra003123.1-P	Field mustard	cytosol	36.48	27.16
Bra001152.1-P	Field mustard	cytosol	18.91	26.89
Bra039431.1-P	Field mustard	cytosol	18.91	26.89
Bra040214.1-P	Field mustard	cytosol	18.91	26.89
Bra030922.1-P	Field mustard	cytosol	18.91	26.76
Bra039688.1-P	Field mustard	cytosol	18.74	26.53
Bra006529.1-P	Field mustard	cytosol	18.41	26.49
Bra002279.1-P	Field mustard	cytosol	18.24	26.25
Bra011079.1-P	Field mustard	cytosol	19.07	25.96
Bra040569.1-P	Field mustard	cytosol	18.57	25.87
Bra010342.1-P	Field mustard	cytosol	19.07	25.84
Bra000999.1-P	Field mustard	cytosol, mitochondrion	33.5	24.25
Bra024165.1-P	Field mustard	cytosol	12.94	24.15
Bra007262.1-P	Field mustard	plastid	34.0	20.92
Bra005733.1-P	Field mustard	cytosol	36.98	20.2
Bra008198.1-P	Field mustard	cytosol	18.08	17.36
Bra020079.1-P	Field mustard	cytosol	18.41	15.4
Bra009342.1-P	Field mustard	cytosol	28.03	15.08
Bra032565.1-P	Field mustard	mitochondrion	28.19	9.12
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.17	0.45

Protein Annotations

EnsemblPlants:Bra017378.1	EnsemblPlants:Bra017378.1-P	EnsemblPlantsGene:Bra017378	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:P-loop_NTPase	PANTHER:PTHR23077	PANTHER:PTHR23077:SF117	PFAM:PF00004	ScanProsite:PS00674	SEG:seg
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002542242	UniProt:M4DLJ7	MapMan:35.1	:

Description

AT2G03670 (E=6e-277) CDC48B | CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding

Coordinates

chrA09:-:14806584..14809459

Molecular Weight (calculated)

65367.4 Da

IEP (calculated)

7.286

GRAVY (calculated)

-0.120

Length

603 amino acids

Sequence
(BLAST)

001: METQTSGCDN IVGDDTWQAE AEIGGNERAL QALRELIIFP FRYPLEARTL GLKWSRGLLL YGPPGTGKTS LVRAVVQECD AHLTVLSPHS VHRAHAGESE
101: KVLREAFAEA SSHAGSDKPS VIFIDEIDVL CPKRSSRGEQ GVRIASQLFT LMDSNKPSSS PPRVVVVAST NRLDAIDPAL RRAGRFDTLV EVSTPNEEDR
201: LKILQLYTKK VSLDPSLDLQ AIATSCNGYV GADLEALCRE ATISASKRST DSLILTSQDF KVAKSVVGPS ITRGITVEIP KVTWDDVGGL KDLKKKLQQA
301: VEWPIKHSAA FTKMGISPMR GILLHGPPGC SKTTLAKAAA NAAQASFFSL SCAELFSMYV GEGEALLRNT FQRARLASPS IIFFDEADVV ACKRGDEGSS
401: NSSTVGERLL STLLTEMDGL EEAKGILVLA ATNRPYAIDA ALMRPGRFDL VLYVPPPDLE ARLEILQVHT RSMKLGDDVD LRKIAEETDL FTGAELEGLC
501: RESGTVSLRE NIAASGVFNR HFLTAKKSLK PALTVEEVET YASFRKSKSS DSRTVPVEKK KVNHSNVLGL GLSWKVGVLS LMLVAAGNFY VKQTKHVELA
601: AAT

Best Arabidopsis Sequence Match ( AT2G03670.1 )
(BLAST)

001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT

Arabidopsis Description

CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.