Factsheet for GSMUA_Achr6P11080_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0376200-00	Rice	cytosol	48.41	74.17
TraesCS2A01G355200.1	Wheat	cytosol	69.62	73.55
TraesCS2B01G373100.1	Wheat	cytosol	69.78	73.46
HORVU2Hr1G086170.2	Barley	cytosol	69.62	73.29
TraesCS2D01G353100.1	Wheat	cytosol	69.45	73.24
KXG26645	Sorghum	cytosol	68.11	71.83
Zm00001d025776_P002	Maize	cytosol	66.94	70.6
Os04t0498800-01	Rice	cytosol	65.28	67.65
Solyc05g012190.2.1	Tomato	cytosol	61.94	60.72
KRH70928	Soybean	cytosol	60.77	60.07
PGSC0003DMT400072919	Potato	cytosol	61.1	59.9
AT2G03670.1	Thale cress	cytosol	59.77	59.37
Bra017378.1-P	Field mustard	cytosol	59.43	59.04
CDY04161	Canola	cytosol	59.43	59.04
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	59.43	49.72
GSMUA_Achr6P29120_001	Banana	cytosol	37.23	37.17
GSMUA_AchrUn_...	Banana	cytosol	11.02	37.08
GSMUA_Achr6P12250_001	Banana	cytosol	17.2	33.99
GSMUA_Achr11P...	Banana	cytosol	17.86	32.82
GSMUA_AchrUn_...	Banana	cytosol	20.7	30.92
GSMUA_Achr5P04520_001	Banana	cytosol	20.87	30.86
GSMUA_Achr9P13230_001	Banana	cytosol	20.87	30.86
GSMUA_Achr7P09950_001	Banana	cytosol	20.53	30.52
GSMUA_Achr8P16830_001	Banana	cytosol	21.54	30.35
GSMUA_AchrUn_...	Banana	cytosol	21.54	30.35
GSMUA_Achr4P03720_001	Banana	cytosol	20.03	30.15
GSMUA_Achr7P17620_001	Banana	cytosol	20.53	30.0
GSMUA_Achr10P...	Banana	cytosol	20.87	29.76
CDY02982	Canola	cytosol	58.1	29.52
GSMUA_Achr4P26800_001	Banana	cytosol	39.4	29.17
GSMUA_Achr3P04570_001	Banana	cytosol	20.53	29.08
GSMUA_Achr4P05850_001	Banana	cytosol	20.53	29.01
GSMUA_Achr7P04540_001	Banana	cytosol	38.23	28.99
GSMUA_Achr4P05840_001	Banana	cytosol	20.37	28.98
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	39.07	28.92
GSMUA_Achr4P03560_001	Banana	mitochondrion	36.06	27.62
GSMUA_Achr9P23550_001	Banana	mitochondrion	36.39	27.05
GSMUA_Achr5P13290_001	Banana	cytosol	9.85	26.82
GSMUA_Achr3P00260_001	Banana	cytosol	21.2	26.02
GSMUA_Achr7P21960_001	Banana	cytosol	19.2	23.76
GSMUA_Achr3P00250_001	Banana	cytosol	7.18	21.94
GSMUA_Achr6P20030_001	Banana	cytosol	28.38	17.6
GSMUA_Achr11P...	Banana	cytosol	28.38	15.16

Protein Annotations

EnsemblPlants:GSMUA_Achr6P11080_001	EnsemblPlants:GSMUA_Achr6T11080_001	EnsemblPlantsGene:GSMUA_Achr6G11080_001	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:P-loop_NTPase	PANTHER:PTHR23077	PANTHER:PTHR23077:SF117	PFAM:PF00004	ScanProsite:PS00674	SEG:seg
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002958A72	UniProt:M0T607	MapMan:35.1	:

Description

Cell division control protein 48 homolog B [Source:GMGC_GENE;Acc:GSMUA_Achr6G11080_001]

Coordinates

chr6:-:7370751..7375940

Molecular Weight (calculated)

66200.4 Da

IEP (calculated)

9.626

GRAVY (calculated)

-0.325

Length

599 amino acids

Sequence
(BLAST)

001: MPPPSPPSNP TILCSFAAAT VVRLLRERDQ EIRWGKVRRA SRTKSCKLIK RQSIISKQPE ATTKRWKLSE PHRLRRAFRP PAARLLSHAF SPSSSFFFWP
101: RGLLLYGPPG TGKTSLVQAV VRECDAHLTM INPYSVHKSH AGESEKFLRE AFSQAYSYAS SGKPSVIFID EIDAICPRRS SRREQESRIV GQLLTLMDGS
201: KSSSRSHLHI VVVASTNRVD GIDPALRRPG RFDSEIEVTV PTIEERLQIL ELYSKNLQLD ENVDLQSIAA SCNGYVGADL EALCREAARF AYRRLDSRDK
301: DALILKMEDW ENARAEVGPS MTRGITKEVS KVSWDDIGGL KDLKKKLQQA VEWPIKHADS FARLGISPVR GVLLHGPPGC SKTTLAKAAA NAAQASFFSL
401: SGAELYSKYV GEGEALLRRT FQKARLAAPS IVFFDEADAI APKRGHGGSS GGNVSVGERL LSTLLTEMDG LELATGIIVL AATNRPHVLD AALMRPGRFD
501: LVLYVPPPDA EGRHEILGIH TRHMKLGEDV DLRKVAESTD HFTGADLEGL CREAGMVALR EDMSADSVCN RHFQTARDSL RPSLTKSMIE EYASARIRR

Best Arabidopsis Sequence Match ( AT2G03670.1 )
(BLAST)

001: MLETESSVCD NIAGNEKWRA EAEIGGNERA LQALRELIIF PFRYPLEART LGLKWPRGLL LYGPPGTGKT SLVRAVVQEC DAHLIVLSPH SVHRAHAGES
101: EKVLREAFAE ASSHAVSDKP SVIFIDEIDV LCPRRDARRE QDVRIASQLF TLMDSNKPSS SAPRVVVVAS TNRVDAIDPA LRRAGRFDAL VEVSTPNEED
201: RLKILQLYTK KVNLDPSVDL QAIAISCNGY VGADLEALCR EATISASKRS SDSLILTSQD FKIAKSVVGP SINRGITVEI PKVTWDDVGG LKDLKKKLQQ
301: AVEWPIKHSA AFVKMGISPM RGILLHGPPG CSKTTLAKAA ANAAQASFFS LSCAELFSMY VGEGEALLRN TFQRARLASP SIIFFDEADV VACKRGDESS
401: SNSSTVGERL LSTLLTEMDG LEEAKGILVL AATNRPYAID AALMRPGRFD LVLYVPPPDL EARFEILQVH TRNMTLGDDV DLRKIAEETD LFTGAELEGL
501: CRESGTVSLR ENIAATAVFN RHFQTAKSSL KPALTIEEVE TYSSFRKAAK RSDSKPIPIN KKKATSTVFG FSWQLGVLSL LLLATGNYYF NHTKHELLVA
601: SAT

Arabidopsis Description

CDC48BCell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.