Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05850_001 | Banana | cytosol | 97.86 | 97.17 |
| KRH32292 | Soybean | cytosol, nucleus | 94.54 | 89.84 |
| KRH19693 | Soybean | cytosol | 94.3 | 89.62 |
| KRH67524 | Soybean | nucleus | 94.77 | 89.46 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 94.54 | 89.44 |
| KRG95799 | Soybean | cytosol, nucleus | 94.54 | 89.24 |
| PGSC0003DMT400051744 | Potato | cytosol | 93.59 | 88.74 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 93.59 | 88.74 |
| PGSC0003DMT400040872 | Potato | cytosol | 93.35 | 88.51 |
| Os03t0298400-01 | Rice | plasma membrane | 94.06 | 88.0 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 93.59 | 87.75 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 93.35 | 87.72 |
| AT4G29040.1 | Thale cress | cytosol | 92.16 | 87.58 |
| CDY35245 | Canola | cytosol | 92.16 | 87.58 |
| Bra011079.1-P | Field mustard | cytosol | 92.16 | 87.58 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 93.35 | 87.53 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 93.35 | 87.53 |
| EER99961 | Sorghum | cytosol | 92.87 | 87.47 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 92.87 | 87.47 |
| CDX97472 | Canola | cytosol | 92.4 | 87.42 |
| AT2G20140.1 | Thale cress | cytosol | 91.92 | 87.36 |
| CDY06847 | Canola | cytosol | 91.92 | 87.36 |
| CDX92914 | Canola | cytosol, extracellular | 91.69 | 87.13 |
| Bra010342.1-P | Field mustard | cytosol | 91.92 | 86.97 |
| CDY14224 | Canola | cytosol | 91.92 | 86.97 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 92.87 | 86.89 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 92.87 | 86.89 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 92.87 | 86.89 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 92.64 | 86.67 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 91.69 | 86.55 |
| Zm00001d007215_P001 | Maize | cytosol | 93.59 | 84.91 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 85.75 | 81.86 |
| CDY59958 | Canola | cytosol | 65.32 | 75.55 |
| Bra024165.1-P | Field mustard | cytosol | 57.96 | 75.54 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 39.67 | 66.53 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 39.19 | 65.74 |
| GSMUA_Achr6P12250_001 | Banana | cytosol | 38.72 | 53.8 |
| GSMUA_Achr11P... | Banana | cytosol | 40.86 | 52.76 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.14 | 50.0 |
| GSMUA_Achr9P13230_001 | Banana | cytosol | 40.38 | 41.98 |
| GSMUA_Achr5P04520_001 | Banana | cytosol | 40.38 | 41.98 |
| GSMUA_Achr7P09950_001 | Banana | cytosol | 40.14 | 41.94 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.19 | 41.15 |
| GSMUA_Achr10P... | Banana | cytosol | 40.62 | 40.71 |
| GSMUA_Achr4P03720_001 | Banana | cytosol | 38.24 | 40.45 |
| GSMUA_Achr7P17620_001 | Banana | cytosol | 38.95 | 40.0 |
| GSMUA_Achr3P04570_001 | Banana | cytosol | 38.72 | 38.53 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.77 | 37.41 |
| GSMUA_Achr8P16830_001 | Banana | cytosol | 37.77 | 37.41 |
| GSMUA_Achr7P21960_001 | Banana | cytosol | 42.76 | 37.19 |
| GSMUA_Achr5P13290_001 | Banana | cytosol | 13.06 | 25.0 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 9.74 | 20.92 |
| GSMUA_Achr6P11080_001 | Banana | plastid | 28.98 | 20.37 |
| GSMUA_Achr6P29120_001 | Banana | cytosol | 26.37 | 18.5 |
| GSMUA_Achr4P03560_001 | Banana | mitochondrion | 28.74 | 15.47 |
| GSMUA_Achr7P04540_001 | Banana | cytosol | 28.27 | 15.06 |
| GSMUA_Achr5P15500_001 | Banana | cytosol, plasma membrane | 28.74 | 14.96 |
| GSMUA_Achr4P26800_001 | Banana | cytosol | 28.74 | 14.96 |
| GSMUA_Achr9P23550_001 | Banana | mitochondrion | 28.03 | 14.64 |
| GSMUA_Achr3P00260_001 | Banana | cytosol | 14.96 | 12.91 |
| GSMUA_Achr6P20030_001 | Banana | cytosol | 26.6 | 11.59 |
| GSMUA_Achr11P... | Banana | cytosol | 27.32 | 10.26 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | EnsemblPlantsGene:GSMUA_Achr4G05840_001 |
| EnsemblPlants:GSMUA_Achr4P05840_001 | EnsemblPlants:GSMUA_Achr4T05840_001 | UniProt:M0SLF1 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF61 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000296906D |
| SEG:seg | : | : | : | : | : |
Description
26S protease regulatory subunit 4 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G05840_001]
Coordinates
chr4:-:4532914..4538445
Molecular Weight (calculated)
46832.4 Da
IEP (calculated)
5.631
GRAVY (calculated)
-0.482
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGLPGDRKR DGDKKDKKFE PAAPPSRVGR KQRRQKGPEA AARLPAEEFV ANQERLRPQE EKNEEDRSKV DDLRGSPMSV GNLEELIDEN
101: HAIVSSSVGP EYYVSILSFV DKDQLEPGCA ILMHNKVLSV VGLLQDEVDP MVSVMKVEKA PLESYADIGG LDSQIQEIKE AVELPLTHPE LYEDIGIRPP
201: KGVILYGEPG TGKTLLAKAV ANSTSATFLR VVGSELIQKY LGDGPKLVRE LFRVADELSP SIVFIDEIDA VGTKRYDAHS GGEREIQRTM LELLNQLDGF
301: DSRGDVKVIL ATNRIESLDP ALLRPGRIDR KIEFPLPDIK TRRRIFQIHT SRMTLADDVN LEEFVMTKDE FSGADIKAIC TEAGLLALRE RRMKVTHTDF
401: KKAKEKVMFK KKEGVPEGLY M
101: HAIVSSSVGP EYYVSILSFV DKDQLEPGCA ILMHNKVLSV VGLLQDEVDP MVSVMKVEKA PLESYADIGG LDSQIQEIKE AVELPLTHPE LYEDIGIRPP
201: KGVILYGEPG TGKTLLAKAV ANSTSATFLR VVGSELIQKY LGDGPKLVRE LFRVADELSP SIVFIDEIDA VGTKRYDAHS GGEREIQRTM LELLNQLDGF
301: DSRGDVKVIL ATNRIESLDP ALLRPGRIDR KIEFPLPDIK TRRRIFQIHT SRMTLADDVN LEEFVMTKDE FSGADIKAIC TEAGLLALRE RRMKVTHTDF
401: KKAKEKVMFK KKEGVPEGLY M
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.