Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04513 | Sorghum | cytosol | 83.0 | 82.44 |
| Os02t0146700-02 | Rice | plasma membrane | 83.33 | 82.41 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 82.55 | 82.17 |
| Zm00001d015259_P001 | Maize | cytosol | 82.32 | 82.13 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 82.21 | 81.56 |
| TraesCS6D01G105500.1 | Wheat | golgi | 82.21 | 81.56 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 81.98 | 81.07 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 81.08 | 80.9 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 81.98 | 80.53 |
| Solyc07g053650.2.1 | Tomato | nucleus | 74.32 | 80.29 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 78.94 | 79.21 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 78.72 | 78.98 |
| Os09t0326800-01 | Rice | plasma membrane | 79.17 | 78.9 |
| Os06t0699900-01 | Rice | plasma membrane | 79.5 | 78.36 |
| PGSC0003DMT400024306 | Potato | cytosol | 78.6 | 77.9 |
| AT2G20580.1 | Thale cress | cytosol | 76.01 | 75.76 |
| Bra024200.1-P | Field mustard | cytosol | 75.11 | 74.86 |
| CDY29907 | Canola | extracellular | 75.0 | 74.75 |
| CDX92875 | Canola | extracellular | 74.77 | 74.52 |
| CDY35187 | Canola | cytosol, extracellular | 74.55 | 74.22 |
| Bra011030.1-P | Field mustard | cytosol | 74.44 | 74.19 |
| CDY38389 | Canola | cytosol, extracellular | 74.44 | 74.1 |
| AT4G28470.1 | Thale cress | cytosol | 73.99 | 73.74 |
| CDY05774 | Canola | cytosol | 74.21 | 73.55 |
| CDY31952 | Canola | plasma membrane | 69.26 | 71.85 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 67.12 | 71.55 |
| Solyc10g008180.1.1 | Tomato | plastid | 56.53 | 68.67 |
| CDX97442 | Canola | cytosol | 68.24 | 68.63 |
| Bra010366.1-P | Field mustard | cytosol | 68.24 | 68.4 |
| CDY14239 | Canola | cytosol, extracellular | 68.24 | 68.24 |
| AT4G08140.1 | Thale cress | cytosol | 6.31 | 66.67 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 59.8 | 64.99 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 60.7 | 64.86 |
| PGSC0003DMT400056260 | Potato | cytosol | 13.06 | 64.44 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 21.17 | 64.38 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 63.51 | 64.09 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 63.51 | 64.09 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 62.39 | 63.9 |
| Solyc10g008170.2.1 | Tomato | cytosol | 13.74 | 60.4 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 41.89 | 60.0 |
| KRH57675 | Soybean | cytosol | 19.93 | 58.42 |
| CDY72396 | Canola | cytosol | 9.12 | 56.25 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 34.12 | 51.71 |
| CDX99107 | Canola | cytosol | 12.5 | 42.86 |
| KRH30269 | Soybean | cytosol | 9.35 | 40.49 |
| CDY33144 | Canola | extracellular | 12.61 | 35.78 |
| CDY65736 | Canola | extracellular | 13.51 | 29.56 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.27 | 20.0 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.17 | 15.04 |
| GSMUA_Achr1P10550_001 | Banana | cytosol | 16.1 | 14.14 |
| GSMUA_Achr1P10570_001 | Banana | extracellular | 2.14 | 12.75 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 | GO:GO:0019538 | GO:GO:0030163 |
| GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 | EnsemblPlantsGene:GSMUA_Achr11G23150_001 | EnsemblPlants:GSMUA_Achr11P23150_001 | EnsemblPlants:GSMUA_Achr11T23150_001 |
| InterPro:IPR011989 | UniProt:M0RUP5 | PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 |
| InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | UniParc:UPI0002966E1D | SEG:seg | : | : |
Description
26S proteasome non-ATPase regulatory subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G23150_001]
Coordinates
chr11:+:23163901..23174486
Molecular Weight (calculated)
97275.2 Da
IEP (calculated)
4.866
GRAVY (calculated)
-0.018
Length
888 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDQKPGAS STSPDGSKPA SKVTKKKDEK KEEDLSDEDL ALKQQLELYV ERVQDAEQGV QKLALESMRQ EIRTATSSMT SVPKPLKFLR PHYGSLKAFF
101: ETMPESDLKK YLADILSVLA LTMSAEGERE SLKYRLLGSE GDIGSWGHEY VRNLAGEISQ EFAKRQYDDL PLDTLMELVQ QIVAFHMKHN AEPEAVDLLM
201: EVEDLELLVE HVDATNYKRA CLYLTSSSSY LPSTDDLLAS DIAFTIYTKF EDYASALRIA LFIDNTQYVK QIYTSTEDLL LKKQFSYIIA RHGLVLEIDE
301: DIAPDDDDRE ALQEIVNNVK LSEGYLALAR DIEVMEPKSP EDIYKVHLID GRASASSSLD SARQNLAATF VNAFVNAGFG QDKLMTVTSE SSSGSSGNWL
401: FKNKEHGKAS AAASLGMILL WDVDSGLSQI DKYLHSNDNH VVAGALLGIG IVSCGVKNDC DPALALLIDY INKDDTIIRI GAILGLGIAY AGSLKDELRI
501: RLSLILGDPK TPLEVLVFSA ITLGLVYVGS CNEEIAQSII LALMERSDTE LGEPLTRLLP VALGLLYLGK QDNVEATAEV SKTFNDKIRK YADITLLSLA
601: YAGTGNVLKV QKLLGYCAQH LEKGENYQGP AVLGIALIAM AEELGLDMAI RSLEHLLQYG EQNIRRAVPL ALGILCISNP KVNVMDTLSR LSHDTDGDVS
701: MAAIISLGLI GAGTNNARIA SMLRNLSSYY YKEAGHLFCV RIAQGLVHLG KGLLTLSPYH SDRFLLSPTA LAGLVTVLHA CLDMKSTILG KYHYMLYILV
801: LAMQPRMLMT VDENLKPISV PVRVGQAVDV VGQAGRPKTI TGFQTHSTPV LLAAGDRAEL ATDKYIPLSS VLEGFVILKE NPDSHDDR
101: ETMPESDLKK YLADILSVLA LTMSAEGERE SLKYRLLGSE GDIGSWGHEY VRNLAGEISQ EFAKRQYDDL PLDTLMELVQ QIVAFHMKHN AEPEAVDLLM
201: EVEDLELLVE HVDATNYKRA CLYLTSSSSY LPSTDDLLAS DIAFTIYTKF EDYASALRIA LFIDNTQYVK QIYTSTEDLL LKKQFSYIIA RHGLVLEIDE
301: DIAPDDDDRE ALQEIVNNVK LSEGYLALAR DIEVMEPKSP EDIYKVHLID GRASASSSLD SARQNLAATF VNAFVNAGFG QDKLMTVTSE SSSGSSGNWL
401: FKNKEHGKAS AAASLGMILL WDVDSGLSQI DKYLHSNDNH VVAGALLGIG IVSCGVKNDC DPALALLIDY INKDDTIIRI GAILGLGIAY AGSLKDELRI
501: RLSLILGDPK TPLEVLVFSA ITLGLVYVGS CNEEIAQSII LALMERSDTE LGEPLTRLLP VALGLLYLGK QDNVEATAEV SKTFNDKIRK YADITLLSLA
601: YAGTGNVLKV QKLLGYCAQH LEKGENYQGP AVLGIALIAM AEELGLDMAI RSLEHLLQYG EQNIRRAVPL ALGILCISNP KVNVMDTLSR LSHDTDGDVS
701: MAAIISLGLI GAGTNNARIA SMLRNLSSYY YKEAGHLFCV RIAQGLVHLG KGLLTLSPYH SDRFLLSPTA LAGLVTVLHA CLDMKSTILG KYHYMLYILV
801: LAMQPRMLMT VDENLKPISV PVRVGQAVDV VGQAGRPKTI TGFQTHSTPV LLAAGDRAEL ATDKYIPLSS VLEGFVILKE NPDSHDDR
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.