Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 4
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65736 | Canola | extracellular | 43.9 | 26.6 |
| AT4G08140.1 | Thale cress | cytosol | 2.85 | 8.33 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 17.07 | 7.17 |
| KRH30269 | Soybean | cytosol | 5.69 | 6.83 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 14.63 | 5.81 |
| Bra016824.1-P | Field mustard | plastid, vacuole | 7.72 | 5.51 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 16.26 | 4.9 |
| Zm00001d015259_P001 | Maize | cytosol | 17.48 | 4.83 |
| Os09t0326800-01 | Rice | plasma membrane | 17.48 | 4.83 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 16.26 | 4.8 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 17.07 | 4.71 |
| Os02t0146700-02 | Rice | plasma membrane | 17.07 | 4.68 |
| EES04513 | Sorghum | cytosol | 16.67 | 4.59 |
| TraesCS6D01G105500.1 | Wheat | golgi | 16.67 | 4.58 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 16.67 | 4.58 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 15.45 | 4.57 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 16.67 | 4.57 |
| Os06t0699900-01 | Rice | plasma membrane | 16.67 | 4.55 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 16.67 | 4.54 |
| Bra024200.1-P | Field mustard | cytosol | 16.26 | 4.49 |
| PGSC0003DMT400056260 | Potato | cytosol | 3.25 | 4.44 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 15.85 | 4.43 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 15.85 | 4.43 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 15.45 | 4.38 |
| Bra011030.1-P | Field mustard | cytosol | 15.85 | 4.38 |
| GSMUA_Achr11P... | Banana | cytosol | 15.04 | 4.17 |
| Bra010366.1-P | Field mustard | cytosol | 14.63 | 4.06 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.03 | 3.45 |
| Solyc10g008170.2.1 | Tomato | cytosol | 2.44 | 2.97 |
| KRH57675 | Soybean | cytosol | 2.85 | 2.31 |
| Bra021810.1-P | Field mustard | cytosol, plastid | 7.32 | 1.79 |
| Bra005560.1-P | Field mustard | plastid | 7.32 | 1.79 |
| Bra022899.1-P | Field mustard | cytosol, plastid | 6.91 | 1.69 |
Protein Annotations
Description
AT2G20580 (E=2e-007) RPN1A, ATRPN1A | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator
Coordinates
chrA07:+:15175709..15178210
Molecular Weight (calculated)
27727.2 Da
IEP (calculated)
8.697
GRAVY (calculated)
-0.928
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKVKRFTFP FLIFPNPNLL DPFVKPFALP LFVYLIQDQS IHPPELIEMA PGPDPNSVGY GAKRDEATTK IPFKDPKKKD DKKEEDLNLE LYVERVQDPN
101: PELQKAALES MRGASVRTLG QNIGAKDTAS RRLPEIFNEA TVKEMRKKEE IAKAKLAMES KKKLAEKAAA KAAIRAQKEA EKKEQKEREK AAKKKTGGSN
201: AYEAISEEVP EASEAEKEEI EAPVEEKPKK EKKVLEGETN KEQDPQ
101: PELQKAALES MRGASVRTLG QNIGAKDTAS RRLPEIFNEA TVKEMRKKEE IAKAKLAMES KKKLAEKAAA KAAIRAQKEA EKKEQKEREK AAKKKTGGSN
201: AYEAISEEVP EASEAEKEEI EAPVEEKPKK EKKVLEGETN KEQDPQ
001: MAPVPDPNSV GGGAKRDEAT TKIPSKDSKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP NPELQKIALE SMRKEIRDST SSMTSVPKPL KFLRPHYGVL
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
Arabidopsis Description
RPN1B26S proteasome non-ATPase regulatory subunit 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q6XJG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.