CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33144	Canola	extracellular	60.1	77.96
CDX99107	Canola	cytosol	40.64	63.71
CDY72396	Canola	cytosol	21.67	61.11
PGSC0003DMT400056260	Potato	cytosol	22.91	51.67
AT4G08140.1	Thale cress	cytosol	9.85	47.62
Solyc10g008170.2.1	Tomato	cytosol	22.66	45.54
Bra003811.1-P	Field mustard	endoplasmic reticulum	26.6	43.9
CDX92875	Canola	extracellular	37.93	17.28
CDY29907	Canola	extracellular	37.93	17.28
CDY38389	Canola	cytosol, extracellular	37.19	16.93
CDY35187	Canola	cytosol, extracellular	36.95	16.82
CDY31952	Canola	plasma membrane	33.25	15.77
CDY05774	Canola	cytosol	34.24	15.51
CDX97442	Canola	cytosol	33.0	15.18
CDY14239	Canola	cytosol, extracellular	32.76	14.98
Os02t0146700-02	Rice	plasma membrane	30.3	13.7
TraesCS6A01G116500.1	Wheat	golgi, unclear	29.8	13.52
TraesCS6D01G105500.1	Wheat	golgi	29.8	13.52
GSMUA_Achr11P...	Banana	cytosol	29.56	13.51
TraesCS6B01G144500.1	Wheat	cytosol	29.8	13.38
HORVU6Hr1G021020.1	Barley	cytosol	29.56	13.36
Os09t0326800-01	Rice	plasma membrane	29.31	13.36
Os06t0699900-01	Rice	plasma membrane	29.56	13.32
EES04513	Sorghum	cytosol	29.06	13.2
Zm00001d053881_P001	Maize	mitochondrion, plastid	28.82	13.12
CDY33145	Canola	extracellular	0.74	13.04
Zm00001d015259_P001	Maize	cytosol	28.57	13.03
TraesCS7B01G322000.1	Wheat	cytosol	23.89	11.02
TraesCS7B01G321900.1	Wheat	cytosol	23.4	10.96
TraesCS7A01G421700.1	Wheat	cytosol	23.4	10.8
KRH30269	Soybean	cytosol	5.42	10.73
TraesCS7D01G413800.1	Wheat	cytosol	16.26	10.65
TraesCS7A01G421600.1	Wheat	mitochondrion	18.23	9.06
TraesCS7D01G413900.1	Wheat	mitochondrion	17.73	8.66
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	9.85	6.83
CDX79472	Canola	cytosol, plastid	9.61	3.9
CDY19162	Canola	extracellular	9.61	3.88
CDX84724	Canola	cytosol, plastid	9.61	3.88
CDY23791	Canola	cytosol, plastid	9.61	3.87
CDY12178	Canola	cytosol	9.36	3.83
CDY60623	Canola	endoplasmic reticulum, golgi	8.87	3.72
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	1.23	3.45
KRH57675	Soybean	cytosol	1.72	2.31

Protein Annotations

EnsemblPlants:CDY65736	EnsemblPlantsGene:GSBRNA2T00048131001	GO:A0A078JIY2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	ProteinID:CDY65736	ProteinID:CDY65736.1	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EDC430	UniProt:A0A078JIY2	MapMan:35.1	:

Description

BnaCnng48550DBnaCnng48550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIY2]

Coordinates

chrLK034927:+:13618..15932

Molecular Weight (calculated)

45989.5 Da

IEP (calculated)

9.625

GRAVY (calculated)

-0.741

Length

406 amino acids

Sequence
(BLAST)

001: MLMMLAQEAH AFALGLLGFT FRSAESGEIH DQSIHPPQLI EMAPGPDPNS VGDGAKRDEA TTKVPSKDPK KKDDKKKEDL SEEDLQLKQN LELYVERVQD
101: PNPELHKVSL ESMRQEIRAS TSSMTSVPKP LKFLRPHYGT LKEFHKNLVE SKESLGYRLT GSEGDIGSWG HEYVRNLAGE IAEEYTVRQV RKQLFMSSLC
201: LAFLCRMSLT YLDITDCYML DRMPKRLGAS VRTLGKNIGA KDTASRRLPE NFNLDEATVK EMRKQEEIAK AKLAMERKKK LAEKAAAKAA IRAQKEAEKK
301: EQKEREKAAK KKTGGSNAYE AISEEVPEAS EAEKEEIEAP VEEKPKKEKK VLKEKPIRNR IRYRGGPETL PRPMLKRKKQ TNYVVWAAPA AVVVLMPLDL
401: GYYYVL

Best Arabidopsis Sequence Match ( AT2G20580.1 )
(BLAST)

001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Arabidopsis Description

RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.