Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
28052459
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024200.1-P | Field mustard | cytosol | 99.21 | 99.21 |
| CDY29907 | Canola | extracellular | 99.21 | 99.21 |
| CDY38389 | Canola | cytosol, extracellular | 94.16 | 94.06 |
| CDY35187 | Canola | cytosol, extracellular | 94.05 | 93.95 |
| AT4G28470.1 | Thale cress | cytosol | 92.7 | 92.7 |
| CDY05774 | Canola | cytosol | 90.91 | 90.4 |
| CDY31952 | Canola | plasma membrane | 84.85 | 88.32 |
| CDX97442 | Canola | cytosol | 83.5 | 84.26 |
| CDY14239 | Canola | cytosol, extracellular | 83.73 | 84.01 |
| Solyc07g053650.2.1 | Tomato | nucleus | 76.88 | 83.33 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 82.94 | 83.03 |
| PGSC0003DMT400024306 | Potato | cytosol | 82.6 | 82.14 |
| GSMUA_Achr11P... | Banana | cytosol | 74.52 | 74.77 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 74.07 | 73.74 |
| TraesCS6D01G105500.1 | Wheat | golgi | 74.07 | 73.74 |
| Os02t0146700-02 | Rice | plasma membrane | 73.96 | 73.39 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 73.96 | 73.39 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 73.96 | 72.9 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 72.73 | 72.65 |
| Zm00001d015259_P001 | Maize | cytosol | 72.39 | 72.47 |
| EES04513 | Sorghum | cytosol | 72.61 | 72.37 |
| Os09t0326800-01 | Rice | plasma membrane | 70.37 | 70.37 |
| Os06t0699900-01 | Rice | plasma membrane | 70.93 | 70.14 |
| Solyc10g008180.1.1 | Tomato | plastid | 56.68 | 69.08 |
| CDY72396 | Canola | cytosol | 10.77 | 66.67 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.76 | 63.36 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 54.32 | 59.24 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 58.02 | 58.75 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 57.01 | 58.59 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 54.32 | 58.24 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 57.24 | 57.95 |
| CDX99107 | Canola | cytosol | 15.94 | 54.83 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 37.71 | 54.19 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 30.53 | 46.42 |
| CDY33144 | Canola | extracellular | 16.05 | 45.69 |
| CDY65736 | Canola | extracellular | 17.28 | 37.93 |
| CDY33145 | Canola | extracellular | 0.56 | 21.74 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 2.81 | 17.24 |
| CDY60623 | Canola | endoplasmic reticulum, golgi | 16.05 | 14.76 |
| CDY12178 | Canola | cytosol | 16.39 | 14.72 |
| CDY19162 | Canola | extracellular | 16.16 | 14.34 |
| CDX84724 | Canola | cytosol, plastid | 16.16 | 14.33 |
| CDX79472 | Canola | cytosol, plastid | 16.05 | 14.31 |
| CDY23791 | Canola | cytosol, plastid | 16.16 | 14.29 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDX92875 |
| ProteinID:CDX92875 | ProteinID:CDX92875.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0042176 | EnsemblPlantsGene:GSBRNA2T00154714001 | InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 |
| PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | UniParc:UPI0004EE8906 | SEG:seg |
Description
BnaC07g41330D
Coordinates
chrLK031873:-:1282380..1287456
Molecular Weight (calculated)
97832.9 Da
IEP (calculated)
4.765
GRAVY (calculated)
-0.086
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGPDPNSI GDGAKRDEAT TKVPSKDPKK KDDKKEEDLS EEDLQLKQNL ELYVERAQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KEFHKNMAES DLKKLLADIL SVLALTMSAE GQRESLGYRL TGSEGDIGSW GHEYVRNLAG EIAEEYTVRQ GEEASIEDLM DLVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDRAN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFEEYPNA LQIALFLDNM QYVKQVFTSC TDLLRKKQFC YMISRHGITF
301: ELDPEMVEND VDREMLQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSADSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAAASLG MILLWDVDAG LTHLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGEYIDKEDS SVRIGAIMGL GIAYAGSQND
501: QIRSSLSPIL NDAKAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGL DMAIRSLERV LQYGEQNVRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIVS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGL VHMGKGLLTL SPFHSERLLL SPTALAGIVT LLHSCLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPMLEGFI ILKENPDYRE E
101: KEFHKNMAES DLKKLLADIL SVLALTMSAE GQRESLGYRL TGSEGDIGSW GHEYVRNLAG EIAEEYTVRQ GEEASIEDLM DLVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDRAN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFEEYPNA LQIALFLDNM QYVKQVFTSC TDLLRKKQFC YMISRHGITF
301: ELDPEMVEND VDREMLQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSADSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAAASLG MILLWDVDAG LTHLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGEYIDKEDS SVRIGAIMGL GIAYAGSQND
501: QIRSSLSPIL NDAKAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGL DMAIRSLERV LQYGEQNVRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIVS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGL VHMGKGLLTL SPFHSERLLL SPTALAGIVT LLHSCLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPMLEGFI ILKENPDYRE E
001: MAPVPDPNSV GGGAKRDEAT TKIPSKDSKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP NPELQKIALE SMRKEIRDST SSMTSVPKPL KFLRPHYGVL
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E
Arabidopsis Description
RPN1B26S proteasome non-ATPase regulatory subunit 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q6XJG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.