CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80372	Canola	extracellular	100.0	100.0
CDX88035	Canola	cytosol	100.0	100.0
AT5G23540.1	Thale cress	cytosol	100.0	100.0
CDY59032	Canola	cytosol	76.3	100.0
CDY16857	Canola	cytosol	100.0	100.0
CDY46961	Canola	cytosol	99.35	99.35
CDY40791	Canola	cytosol	98.38	98.38
VIT_18s0001g10820.t01	Wine grape	cytosol	95.13	94.82
KRH11080	Soybean	cytosol	94.16	93.85
KRH21194	Soybean	cytosol, nucleus	94.16	93.85
KRH05705	Soybean	cytosol, nucleus	94.81	93.59
PGSC0003DMT400020708	Potato	cytosol	93.83	92.63
Solyc04g079200.2.1	Tomato	nucleus	92.86	91.67
KRH15339	Soybean	nucleus	93.83	91.46
Os06t0703600-01	Rice	cytosol	64.61	64.61
TraesCS7B01G316000.1	Wheat	cytosol	64.29	64.08
TraesCS7D01G409200.1	Wheat	cytosol	64.29	64.08
TraesCS7A01G416000.1	Wheat	cytosol	63.96	63.75
HORVU7Hr1G096410.6	Barley	cytosol, plastid	58.44	54.05
CDY25761	Canola	cytosol	29.22	25.28
CDY21400	Canola	cytosol	28.25	24.44
CDY04768	Canola	cytosol	28.25	24.44
CDY12502	Canola	cytosol	24.35	21.25

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	UniProt:A0A078DFR1	EnsemblPlants:CDX87167	ProteinID:CDX87167	ProteinID:CDX87167.1
ProteinID:CDY16857.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578
GO:GO:0070536	EnsemblPlantsGene:GSBRNA2T00146089001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C
SMART:SM00232	SUPFAM:SSF102712	UniParc:UPI000009ECF6	SEG:seg	:	:

Description

BnaC09g04820DBnaA06g26260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DFR1]

Coordinates

chrLK031849:-:896945..898749

Molecular Weight (calculated)

34355.5 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.243

Length

308 amino acids

Sequence
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.