CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59032	Canola	cytosol	75.65	99.15
CDY46961	Canola	cytosol	99.03	99.03
CDX80372	Canola	extracellular	98.38	98.38
CDX87167	Canola	cytosol	98.38	98.38
CDX88035	Canola	cytosol	98.38	98.38
AT5G23540.1	Thale cress	cytosol	98.38	98.38
CDY16857	Canola	cytosol	98.38	98.38
VIT_18s0001g10820.t01	Wine grape	cytosol	95.45	95.15
KRH21194	Soybean	cytosol, nucleus	95.45	95.15
KRH11080	Soybean	cytosol	95.45	95.15
KRH05705	Soybean	cytosol, nucleus	95.45	94.23
PGSC0003DMT400020708	Potato	cytosol	94.81	93.59
Solyc04g079200.2.1	Tomato	nucleus	93.83	92.63
KRH15339	Soybean	nucleus	94.48	92.09
Os06t0703600-01	Rice	cytosol	64.61	64.61
TraesCS7A01G416000.1	Wheat	cytosol	63.96	63.75
TraesCS7B01G316000.1	Wheat	cytosol	63.64	63.43
TraesCS7D01G409200.1	Wheat	cytosol	63.64	63.43
HORVU7Hr1G096410.6	Barley	cytosol, plastid	58.44	54.05
CDY25761	Canola	cytosol	29.55	25.56
CDY21400	Canola	cytosol	28.57	24.72
CDY04768	Canola	cytosol	28.57	24.72
CDY12502	Canola	cytosol	24.68	21.53

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	UniProt:A0A078HSS5	EnsemblPlants:CDY40791	ProteinID:CDY40791	ProteinID:CDY40791.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578	GO:GO:0070536
EnsemblPlantsGene:GSBRNA2T00071699001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232
SUPFAM:SSF102712	UniParc:UPI0004EE4F81	SEG:seg	:	:	:

Description

BnaC02g41600DBnaC02g41600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSS5]

Coordinates

chrLK032479:-:10055..12320

Molecular Weight (calculated)

34309.4 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.249

Length

308 amino acids

Sequence
(BLAST)

001: MERLQRIFGG GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RPFDTHSKTN EQTVQEMLNL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Best Arabidopsis Sequence Match ( AT1G71230.1 )
(BLAST)

001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY

Arabidopsis Description

CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.