Factsheet for Solyc04g079200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020708	Potato	cytosol	98.72	98.72
VIT_18s0001g10820.t01	Wine grape	cytosol	95.83	96.76
KRH05705	Soybean	cytosol, nucleus	96.15	96.15
KRH21194	Soybean	cytosol, nucleus	95.19	96.12
KRH11080	Soybean	cytosol	95.19	96.12
CDY59032	Canola	cytosol	71.47	94.89
KRH15339	Soybean	nucleus	95.51	94.3
CDY40791	Canola	cytosol	92.63	93.83
Bra029375.1-P	Field mustard	cytosol	74.68	93.57
Bra009693.1-P	Field mustard	cytosol	91.67	92.86
Bra026492.1-P	Field mustard	cytosol	91.67	92.86
AT5G23540.1	Thale cress	cytosol	91.67	92.86
CDY46961	Canola	cytosol	91.67	92.86
CDY16857	Canola	cytosol	91.67	92.86
CDX88035	Canola	cytosol	91.67	92.86
CDX87167	Canola	cytosol	91.67	92.86
CDX80372	Canola	extracellular	91.67	92.86
Os06t0703600-01	Rice	cytosol	64.74	65.58
TraesCS7A01G416000.1	Wheat	cytosol	64.74	65.37
TraesCS7B01G316000.1	Wheat	cytosol	63.46	64.08
TraesCS7D01G409200.1	Wheat	cytosol	63.46	64.08
HORVU7Hr1G096410.6	Barley	cytosol, plastid	56.09	52.55
Solyc11g017300.1.1	Tomato	cytosol	29.49	25.07
Solyc06g073150.2.1	Tomato	cytosol	28.85	24.52

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0061578	GO:GO:0070536	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:K4BV04	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13
InterPro:Rpn11/EIF3F_C	SMART:SM00232	SUPFAM:SSF102712	EnsemblPlantsGene:Solyc04g079200.2	EnsemblPlants:Solyc04g079200.2.1	UniParc:UPI0002766FDB
SEG:seg	:	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 14 homolog [Source:Projected from Arabidopsis thaliana (AT5G23540) UniProtKB/Swiss-Prot;Acc:Q9LT08]

Coordinates

chr4:-:63746132..63751331

Molecular Weight (calculated)

34711.0 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.243

Length

312 amino acids

Sequence
(BLAST)

001: MSGMERLQRM FAGAGGALGH PPPDSPTLDS SEQVYISSLA LLKMLKHGRA GVPMEVMGLM LGDFVDEYTV RVVDVFAMPQ SGTGVSVEAV DHVFQTNMLD
101: MLKQTGRPEM VVGWYHSHPG FGCWLSGVDI NTQQSFEALN QRAVAVVVDP IQSVKGKVVI DAFRLINPQT MMLGQEPRQT TSNLGHLNKP SIQALIHGLN
201: RHYYSIAINY RKNELEEKML LNLHKKKWTD GLALQRFDAH SKTNEQTVQE MLNLAGKYNK AVQQEDELTP EKLAIANVGR QDAKKHLEEH VSDLMSSNIV
301: QTLGTMLDTV IF

Best Arabidopsis Sequence Match ( AT5G23540.1 )
(BLAST)

001: MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ
101: TGRPEMVVGW YHSHPGFGCW LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL GHLNKPSIQA LIHGLNRHYY
201: SIAINYRKNE LEEKMLLNLH KKKWTDGLTL RRFDTHSKTN EQTVQEMLSL AAKYNKAVQE EDELSPEKLA IVNVGRQDAK KHLEEHVSNL MSSNIVQTLG
301: TMLDTVVF

Arabidopsis Description

RPN1126S proteasome non-ATPase regulatory subunit 14 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LT08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.