CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80372	Canola	extracellular	100.0	76.3
CDX87167	Canola	cytosol	100.0	76.3
CDX88035	Canola	cytosol	100.0	76.3
AT5G23540.1	Thale cress	cytosol	100.0	76.3
CDY16857	Canola	cytosol	100.0	76.3
CDY46961	Canola	cytosol	99.15	75.65
CDY40791	Canola	cytosol	99.15	75.65
VIT_18s0001g10820.t01	Wine grape	cytosol	97.45	74.11
KRH11080	Soybean	cytosol	96.17	73.14
KRH21194	Soybean	cytosol, nucleus	96.17	73.14
KRH05705	Soybean	cytosol, nucleus	97.02	73.08
PGSC0003DMT400020708	Potato	cytosol	96.17	72.44
Solyc04g079200.2.1	Tomato	nucleus	94.89	71.47
KRH15339	Soybean	nucleus	95.74	71.2
Os06t0703600-01	Rice	cytosol	64.68	49.35
TraesCS7A01G416000.1	Wheat	cytosol	64.68	49.19
TraesCS7B01G316000.1	Wheat	cytosol	64.68	49.19
TraesCS7D01G409200.1	Wheat	cytosol	64.68	49.19
HORVU7Hr1G096410.6	Barley	cytosol, plastid	62.98	44.44
CDY25761	Canola	cytosol	27.66	18.26
CDY21400	Canola	cytosol	26.81	17.7
CDY04768	Canola	cytosol	26.81	17.7
CDY12502	Canola	cytosol	25.11	16.71

Protein Annotations

MapMan:19.2.6.2.2.10	Gene3D:3.40.140.10	UniProt:A0A078J6W2	EnsemblPlants:CDY59032	ProteinID:CDY59032	ProteinID:CDY59032.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0061578	GO:GO:0070536
EnsemblPlantsGene:GSBRNA2T00025465001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	PFAM:PF01398	PFAM:PF13012
PFscan:PS50249	InterPro:PSMD14	PANTHER:PTHR10410	PANTHER:PTHR10410:SF13	InterPro:Rpn11/EIF3F_C	SMART:SM00232
SUPFAM:SSF102712	UniParc:UPI0004EE4296	SEG:seg	:	:	:

Description

BnaCnng34170DBnaCnng34170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6W2]

Coordinates

chrLK033719:-:11449..12888

Molecular Weight (calculated)

26476.8 Da

IEP (calculated)

7.392

GRAVY (calculated)

-0.386

Length

235 amino acids

Sequence
(BLAST)

001: MPQSGTGVSV EAVDHVFQTN MLDMLKQTGR PEMVVGWYHS HPGFGCWLSG VDINTQQSFE ALNQRAVAVV VDPIQSVKGK VVIDAFRSIN PQTIMLGQEP
101: RQTTSNLGHL NKPSIQALIH GLNRHYYSIA INYRKNELEE KMLLNLHKKK WTDGLTLRRF DTHSKTNEQT VQEMLSLAAK YNKAVQEEDE LSPEKLAIVN
201: VGRQDAKKHL EEHVSNLMSS NIVQTLGTML DTVVF

Best Arabidopsis Sequence Match ( AT5G27607.1 )
(BLAST)

001: MSIKVRSKFL MPPQLPLYCP SYSVSVFRAV LLMKSHRNFL SYSSASSSKE SLVLSTSYMA LPRSLAFFPF SMILLRLRPE MVVGWYHSHP GFGFWRSGVD
101: INTQHSFEPL NQRAVAQLKE NE

Arabidopsis Description

JAB1/Mov34/MPN/PAD-1 ubiquitin protease [Source:UniProtKB/TrEMBL;Acc:A0A1P8BGX5]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.